Locus 3626

Sequence ID 2L_DroMel_CAF1
Location 10,578,487 – 10,578,581
Length 94
Max. P 0.958962
window5721

overview

Window 1

Location 10,578,487 – 10,578,581
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 76.19
Mean single sequence MFE -22.54
Consensus MFE -13.12
Energy contribution -13.07
Covariance contribution -0.05
Combinations/Pair 1.29
Mean z-score -2.16
Structure conservation index 0.58
SVM decision value 1.50
SVM RNA-class probability 0.958962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10578487 94 - 22407834
AAAAAAAAAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGGUGGAAGCAAGUGUGGCAGAUGAGAAUGGGG
............(..((((((((.((((..((((.((((((.((((.(.....)))))..-))))))..))))..))))...))))))))..).. ( -24.50)
>DroSec_CAF1 66020 86 - 1
--------AAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGAAGGAAACAAAUGUGGCAGAUGAGAAUGGGG
--------....(..((((((((.......(((..((((.....(((....)))..((((-.....))))...))))..)))))))))))..).. ( -21.81)
>DroSim_CAF1 66008 87 - 1
-------AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGAAGGAACCAAAUGUGGCAGAUGAGAAUGGGG
-------.....(..((((((((.......(((..((((.....(((....))).(((((-.....)))))..))))..)))))))))))..).. ( -24.51)
>DroEre_CAF1 67093 79 - 1
--------AAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA------GAGAGCC-AUG-AGGAAGCAAGUGUGGCAGAUGAGGACGGGG
--------....(((((((((((.((((..((((...((((.(.((.------...))).-)))-)...))))..))))...))))))))))).. ( -21.30)
>DroYak_CAF1 68880 72 - 1
-------AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA------GAG---------AGGAAGCAAAUGUGGCAGAUGAGAG-UAGG
-------.....(((((((((((..((.....((((...........------...---------.....)))).....)).))))))))-))). ( -14.21)
>DroAna_CAF1 70090 81 - 1
-------AAAAGUGGUUCUGGCUGCGCAAGUGUUGCAUUAUAGACUC------CAGCACGAAUG-GGGAGGCACGGCCAGCAGCUACGAGCUGGC
-------....(((((((((((((.((.((((...)))).....(((------((.......))-)))..)).))))))).))))))........ ( -28.90)
>consensus
_______AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA______GAGUUCC_AUG_AGGAAGCAAAUGUGGCAGAUGAGAAUGGGG
............((((((((((((((((.....)))..............................(....).......))).)))))))))).. (-13.12 = -13.07 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:09 2006