Locus 3623

Sequence ID 2L_DroMel_CAF1
Location 10,566,454 – 10,566,558
Length 104
Max. P 0.999175
window5717

overview

Window 7

Location 10,566,454 – 10,566,558
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 93.84
Mean single sequence MFE -24.72
Consensus MFE -24.04
Energy contribution -23.36
Covariance contribution -0.68
Combinations/Pair 1.18
Mean z-score -1.92
Structure conservation index 0.97
SVM decision value 3.41
SVM RNA-class probability 0.999175
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10566454 104 - 22407834
GGAGGGAGAGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCUGCAAA
(.((((((((.......................(((((............)))))(.((((........((((........)))))))).))))))))).)... ( -23.00)
>DroSec_CAF1 54086 104 - 1
GGAGGGGGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUUCUUCUCCCCGCAAA
((((((((((((.((..........((.((...(((((............))))).))))...((.....)).....)).))))))))))))............ ( -23.60)
>DroSim_CAF1 53823 104 - 1
GGAGGGAGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCCGCAAA
(((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))............. ( -25.10)
>DroEre_CAF1 54655 101 - 1
GGAGGAGGGAAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCC---UCCUUCCGAA
((((((((((..((((.........((.((...(((((............))))).))))...((.....)).....).)))..)))))))---)))....... ( -26.50)
>DroYak_CAF1 56390 103 - 1
GGAGGAGGGAAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCCU-UCCCUUCAAA
(((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))..-.......... ( -25.40)
>consensus
GGAGGGGGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCUGCAAA
(((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))............. (-24.04 = -23.36 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:06 2006