Locus 3622

Sequence ID 2L_DroMel_CAF1
Location 10,564,101 – 10,564,201
Length 100
Max. P 0.960072
window5716

overview

Window 6

Location 10,564,101 – 10,564,201
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -19.10
Consensus MFE -16.00
Energy contribution -16.28
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 1.51
SVM RNA-class probability 0.960072
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10564101 100 - 22407834
UAAAAUGCAAAUUUAAAUAGAGAAUCGGCAAAGUUUACAUAAAUUCUGGCCUUACAUUUUAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU
..........((((((((.(......(((..(((((....)))))...)))...........(((((((..........)))))))....).)))))))) ( -19.10)
>DroSec_CAF1 51730 98 - 1
UAAAAUGCAAAUUUAAAUA--AAAUCGGCAAAGUUUACAUAAAUUCUGGCCCUACAUUUUAAAGCCAGACGAAAAUGUUGCUGGCUAAAACAAUUUGAAU
.......((((((....((--((((.(((..(((((....)))))...)))....)))))).((((((.(((.....))))))))).....))))))... ( -18.20)
>DroSim_CAF1 51468 98 - 1
UAAAAUGCAAAUUUAAAUA--GAAUCGGCAAAGUUUACAUAAAUUCUGGCCUUACAUUUUAAAGCCAGACGAAAAUGUUGCUGGCUAAAACAAUUUGAAU
.......((((((....((--(...((((((.((((.(......((((((.(((.....))).)))))).).)))).)))))).)))....))))))... ( -19.20)
>DroEre_CAF1 52339 95 - 1
UAAAAUGCAAAUUUAAAUA--GAAUCGCCGAAGUUCACAUAAG-UCUGGCCGUACAU--UAAAGCCAGCCGAAAAUGUUGCUGGCUAACACAGUUUGAAU
..........((((((((.--(....(((((..(......)..-)).))).......--...(((((((..........)))))))....).)))))))) ( -18.30)
>DroYak_CAF1 54007 96 - 1
UAAAAUGCAAAUUUAAAUA--GAAUCGGCAAAGUUUACAUAAAUUCUGGCCGUACAU--UAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU
..........((((((((.--(...((((..(((((....)))))...)))).....--...(((((((..........)))))))....).)))))))) ( -20.70)
>consensus
UAAAAUGCAAAUUUAAAUA__GAAUCGGCAAAGUUUACAUAAAUUCUGGCCGUACAUUUUAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU
..........((((((((........(((..(((((....)))))...)))...........((((((.(((.....)))))))))......)))))))) (-16.00 = -16.28 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:05 2006