Locus 3621

Sequence ID 2L_DroMel_CAF1
Location 10,558,302 – 10,558,401
Length 99
Max. P 0.937293
window5715

overview

Window 5

Location 10,558,302 – 10,558,401
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.10
Mean single sequence MFE -28.59
Consensus MFE -25.10
Energy contribution -24.94
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.88
SVM decision value 1.26
SVM RNA-class probability 0.937293
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10558302 99 + 22407834
CUGAUUAGGAUGGAACGAAACGGAAUGUCGAAGAUAUCGACGGACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUGC
.((((((((((((.((((........(((((.....)))))((((.(((((......)))))))))...)))).))))))))))))..(((.....))) ( -29.90)
>DroSec_CAF1 45969 99 + 1
CUGAUUAGGAUGUAACGGAACGGAAUGUCGAAGACAUCGACGCACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGAAAUGC
.(((((((((((..............(((((.....)))))((((((.((((((......))).)))..)))))))))))))))))..(((.....))) ( -27.70)
>DroSim_CAF1 45697 99 + 1
CUGAUUAGGAUGGAACGGAACGGAAUGUCGAAGAUAUCGACGCACGGAAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACAGAAUGC
..((((((((((((............(((((.....)))))....(((((....)))))))))))))))))((((.............))))....... ( -29.32)
>DroEre_CAF1 46695 94 + 1
CUGAUUAGGACGGAG-----GAGAACGUCGAAGAUAUCGACGCACAGGAGGCGACUUUCUUUGUCCUGAUUGUGCCAUUUUAAUUAAAGCUCGGAAUGU
..(((((((((((((-----((...((((((.....))))))......((....)))))))))))))))))....(((((..(.......)..))))). ( -28.10)
>DroYak_CAF1 48171 99 + 1
CUGAUUAGGACGGAACGAAACGGAACGUCGAAGAUAUCGACACACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUAU
..((((((((((((............(((((.....))))).....((((....)))).))))))))))))((((.............))))....... ( -27.92)
>consensus
CUGAUUAGGAUGGAACGAAACGGAAUGUCGAAGAUAUCGACGCACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUGC
..((((((((((((............(((((.....))))).....((((....)))).))))))))))))((((.............))))....... (-25.10 = -24.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006