Locus 3617

Sequence ID 2L_DroMel_CAF1
Location 10,546,418 – 10,546,530
Length 112
Max. P 0.704363
window5709

overview

Window 9

Location 10,546,418 – 10,546,530
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 81.70
Mean single sequence MFE -17.46
Consensus MFE -10.53
Energy contribution -9.90
Covariance contribution -0.62
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.60
SVM decision value 0.36
SVM RNA-class probability 0.704363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10546418 112 + 22407834
AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAGUCAAUAUUGCAGACCAUUCUACUAACAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG
.......((((((...((((..(((((((.((.....)))))..))))))))........((((((.....(((((((((....)))))))))......)))))))))))). ( -15.90)
>DroSec_CAF1 34453 112 + 1
AAAUUAAUUGGUUAAAUGCACAAUAUGCUCGAAUCCUUCAACCAAUAUGGCAUACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG
.........((......(((.....)))......))....(((((((.(((.................)))(((((((((....)))))))))....)))))))........ ( -18.53)
>DroSim_CAF1 34139 112 + 1
AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAGCCAAUAUUGCAUACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG
.......((((((...((((......(((.((.....)))))......))))(((((((((....))))..(((((((((....))))))))).......))))))))))). ( -19.90)
>DroEre_CAF1 35075 88 + 1
GAAUUAAUUAAAUAA------------------------AACCAAUAUAGCAGGCCACUUCACUACGAGCCAAACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG
...............------------------------.(((((((.....((((..........).)))(((((((((....)))))))))....)))))))........ ( -15.50)
>consensus
AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAACCAAUAUUGCAGACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG
........................................(((((((..((.................)).(((((((((....)))))))))....)))))))........ (-10.53 =  -9.90 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:58 2006