| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,543,979 – 10,544,087 |
| Length | 108 |
| Max. P | 0.841909 |
| Location | 10,543,979 – 10,544,087 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -22.30 |
| Energy contribution | -23.22 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10543979 108 - 22407834 -UGAGCAGGUAAUGUCGGUGCCACCAGUGCACCACUAU--------ACCACUGCACCACUGAUAAGCCCCGACCGGCCACCGACCCACUCGUGCACAUGGCGACAUUCCUAGUACCA -...(((((.((((((((((((....).))))).....--------.(((.(((((.........(((......)))....((.....)))))))..))).))))))))).)).... ( -30.90) >DroSec_CAF1 32068 108 - 1 -UGAGCAGGUAAUGUCGGUGCCACCAGUGCACCACUAC--------ACCACUGCACCACUGAUAAGCCACGACCGGCCACCGACCCACUCGCGCACAUGGCGACAUUCCUAGUUUCA -.(((((((.((((((((((((....).))))).....--------.(((.(((...........(((......)))...(((.....))).)))..))).))))))))).)))).. ( -30.40) >DroSim_CAF1 31768 108 - 1 -UGAGCAGGUAAUGUCGGUGCCACCAGUGCACCACUAC--------ACCACUGCACCACUGAUAAGCCACGACCGGCCAGCGACCCACUCGCGCACAUGGCGACAUUCCUAGUUCCA -.(((((((.((((((((((((....).))))).....--------.(((.(((...........(((......)))..((((.....)))))))..))).))))))))).)))).. ( -37.10) >DroEre_CAF1 32647 115 - 1 -UGGGCAGGUAAUGUCGGUGCCACCAUAGCACCACUACACCACUACACCACUGCACCACUGAUAAGCCCCG-CCGGCCACCGACCCACUCGUGCACAUGGCGACAUUCCUAGUCCAA -((((((((.(((((((((((.......)))))..............(((.(((((.........(((...-..)))....((.....)))))))..))).))))))))).))))). ( -37.10) >DroYak_CAF1 33741 116 - 1 -UGAGCAGGUAAUGUCGGUGCCACCACUGCACCACUACACAACUACAACACUGCACCACUGAUAAGCCCCGACCGGCCACCGACCCACUCGUGCAGAUGGCGACAUUCCUAGCUGAA -(.((((((.(((((((((((.......)))))...............((((((((.........(((......)))....((.....)))))))).))..))))))))).))).). ( -35.40) >DroAna_CAF1 36750 89 - 1 GUAAACAGGUAAUGGCAGUACCUCCACUGCAC-------------------UG---AACUGAUAAGCC-----CGGCCAGCGACCCAAUCGUGCACAUGGCGACAUUCCGGGCUCU- .....(((......(((((......)))))..-------------------..---..)))...((((-----(((...((((.....))))....(((....))).)))))))..- ( -27.30) >consensus _UGAGCAGGUAAUGUCGGUGCCACCAGUGCACCACUAC________ACCACUGCACCACUGAUAAGCCCCGACCGGCCACCGACCCACUCGUGCACAUGGCGACAUUCCUAGUUCCA ..(((((((.(((((((((((.......)))))................................(((.......((...(((.....))).))....)))))))))))).)))).. (-22.30 = -23.22 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:56 2006