| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,541,232 – 10,541,331 |
| Length | 99 |
| Max. P | 0.841654 |
| Location | 10,541,232 – 10,541,331 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -19.05 |
| Energy contribution | -19.05 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10541232 99 + 22407834 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC------------ACCCAGCAAAC ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))............------------.....)).... ( -22.20) >DroVir_CAF1 40226 95 + 1 GCAAUUACAGUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAACUUGCGGCCCAAUAUUAGCAGACG-UCC---------------GCCUAGCAAAC ((......((((((((.....((((((......)))))).......))))))))......((((.(..............)-.))---------------))...)).... ( -24.24) >DroGri_CAF1 36559 92 + 1 GCAAUUACAGUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAACUUGCAGCCCAAUAUUAGCAGAUG-UCC---------------GCCUAU---AC ((((....((((((((.....((((((......)))))).......))))))))....)))).((...(((((....))))-)..---------------))....---.. ( -23.30) >DroEre_CAF1 29782 97 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC--------C--CACGC---AAG- ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))............--------.--...))---...- ( -22.30) >DroYak_CAF1 30711 102 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGCCCACC--------CAGCACCCAGCACC- ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...))))).(..(((.....--------..)))..).))...- ( -23.70) >DroPer_CAF1 30666 107 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCGUGGUACACAAUAUUAGCAGCCAGGACUGGACUUGUGG----CCCCAGAGAGU ...........(((((.....((((((......)))))).......)))))(((((...((.....))...))))).((((.((......)).)))----).......... ( -27.20) >consensus GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC____________ACCCAGCAAAC ...........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))................................... (-19.05 = -19.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:55 2006