Locus 3613

Sequence ID 2L_DroMel_CAF1
Location 10,537,866 – 10,537,964
Length 98
Max. P 0.800936
window5705

overview

Window 5

Location 10,537,866 – 10,537,964
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 93.79
Mean single sequence MFE -36.84
Consensus MFE -32.24
Energy contribution -32.08
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.37
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.800936
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10537866 98 - 22407834
GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUGCCAAGCAGCCGGGCACGAAGAACAAUGCAAC
((((.((.((...(((((......(((((..(((((....))))).))))).((....)).....))))).)).)).))))................. ( -35.80)
>DroSec_CAF1 26080 93 - 1
GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCACGGAGAACAAUGCAUC
((((........(((....)))..(((((..(((((....))))).))))).((....))))))(((-----((.(((....))).......))))). ( -37.10)
>DroSim_CAF1 25460 93 - 1
GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCACGGAGAACAAUGCAUC
((((........(((....)))..(((((..(((((....))))).))))).((....))))))(((-----((.(((....))).......))))). ( -37.10)
>DroEre_CAF1 26550 93 - 1
GUCCAGCAGUCGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCGAGGAGAACAAUGCACC
((((....(((.(((....)))..(((((..(((((....))))).))))).....))).)))).((-----((...(..(.....)..)..)))).. ( -36.60)
>DroYak_CAF1 25778 93 - 1
GUCCAGCAGUCGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----AAGUCGGGCAUGAAGAACAAUGCACC
((((....(((.(((....)))..(((((..(((((....))))).))))).....))).))))...-----.....((((((........)))).)) ( -37.60)
>consensus
GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG_____CAGCCGGGCACGGAGAACAAUGCACC
((((.((.....(((....)))..(((((..(((((....))))).))))).((....))..............)).))))................. (-32.24 = -32.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006