| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,526,142 – 10,526,251 |
| Length | 109 |
| Max. P | 0.709043 |
| Location | 10,526,142 – 10,526,251 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.82 |
| Mean single sequence MFE | -22.96 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.11 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10526142 109 + 22407834 CACUCGGGCAUUUGCGAAAUUUGUCUUCUGACGAGGGAAUUCCCCAUCAUAU-----CCUUCGUACCCAUUUCCCUCCCCCAUUUCCAGGGAUCCCAAAACACCCGCAUCCUAU ....((((....((((((..(((((....)))))(((.....))).......-----..))))))......(((((...........)))))..........))))........ ( -24.50) >DroSec_CAF1 14487 109 + 1 UGCCAGGGCAUUUGCGAAAUUUGUCUUCUGGCGAGGGAAUUCCCCAUCAUAC-----CCUUCGUACCCAUUUCCCUCCCCCAUUUUCAGGGAUCCCAAAACACCCGCAUCCUAU (((..(((....((((((..(((((....)))))(((.....))).......-----..)))))))))...(((((...........))))).............)))...... ( -24.40) >DroSim_CAF1 14281 109 + 1 CACUCGGGCAUUUGCGAAAUUUGUCUUCUGGCGAGGGUAUUCCCCAUCAUAU-----CCUUCGUACCCAUUUCCCUCCACCAUUUCCAGGGAUCCCAAAACACCCGCAUCCUAU ....((((....((((((..(((((....)))))((((((........))))-----))))))))......(((((...........)))))..........))))........ ( -24.00) >DroEre_CAF1 14965 110 + 1 CACUCGGGUGUAUGCGAAAUUUGUCUUCUGGCGAGGGAAUUCCCCAUUAUAUCAUACCCUUCGUACCCAU---CCU-CCCCAAUUCCAGAGGUCCCAAAACGCCCGCAUCCUAC ....(((((((.((((((..(((((....)))))(((.....)))..............)))))).....---(((-(..........)))).......)))))))........ ( -27.80) >DroYak_CAF1 14993 91 + 1 CACUCCGGUAUUUGCGAAAUUUGUCUUCUGGCGAGGGAAUUCCCCAUCAUAG----------------------CU-CCCCAUUUCCAGAGGUCCCAAAACGCCCGCAUCCUAU ......((....((((...((((.(((((((.(((((...............----------------------..-.))).)).)))))))...)))).....)))).))... ( -20.07) >DroAna_CAF1 14892 96 + 1 UAUUCCGGCAUUUGCAAAAUUUGUCUGCUCGUGUGGGAAUUUC--AGCACUC-----CCCUC-----UAUU------UCAGAAUACCCGAGGUCCCAAAACGCCCGCAUCUUAU .(((((.((((..(((.........)))..)))).)))))...--.((....-----...((-----(...------..)))......(.(((........))))))....... ( -17.00) >consensus CACUCGGGCAUUUGCGAAAUUUGUCUUCUGGCGAGGGAAUUCCCCAUCAUAU_____CCUUCGUACCCAUU__CCU_CCCCAUUUCCAGAGAUCCCAAAACACCCGCAUCCUAU .....(((....((((....(((((....)))))(((.(((((.............................................))))))))........)))).))).. (-11.78 = -12.11 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:51 2006