Locus 361

Sequence ID 2L_DroMel_CAF1
Location 1,128,895 – 1,129,007
Length 112
Max. P 0.906789
window569

overview

Window 9

Location 1,128,895 – 1,129,007
Length 112
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.23
Mean single sequence MFE -29.35
Consensus MFE -17.93
Energy contribution -20.43
Covariance contribution 2.50
Combinations/Pair 1.11
Mean z-score -2.21
Structure conservation index 0.61
SVM decision value 1.05
SVM RNA-class probability 0.906789
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1128895 112 + 22407834
AAUUCAGGCAAAACAAAACUUUGCUUGCAAAAUUGCUGGCAACUAGAGGUGGUCAGCUGUCGAUUAUCGUAGUUGGCAACACUAAUCGAUAGG---ACAGAAAGCGUUAUGCAUU
.....(((((((.......)))))))(((.....((((((.((.....)).))))))((((..((((((((((.(....)))))..)))))))---)))..........)))... ( -29.90)
>DroSec_CAF1 15476 104 + 1
--------UAAAACAAAACUUUGCUUGCAAAAGUGCUGGCAAUUGGAGGUGGCCCGCUGUCGAUUAUUGUAGUUGGCAACAGUAAUCGAUAGG---AUAGAAAGCGUUAUGCAUU
--------.................((((.((.(((((((.((.....)).)))..((((((((((((((.(....).)))))))))))))).---......)))))).)))).. ( -28.60)
>DroSim_CAF1 15341 112 + 1
AAUUCCUGCAAAACAAAACUUUGCUUGCAAAAUUGCUGGCAACUGGAGGUGGCCCGCUGUCGAUUAUUGUAGUUGGCAACACUAAUCGAUAGG---ACAGAAAGCGUUAUGCAUU
......((((.(((......(((((.(((....))).)))))(((..((....)).((((((((((.(((.(....).))).)))))))))).---.))).....))).)))).. ( -32.60)
>DroEre_CAF1 15868 110 + 1
AAUUUCUGCAAAACAAAACUUUGCUUGCAA-AUUGCUGGCAACUAGAGGUGGUAAGCUGCCGAUUUUUGUAGUUGGCAACACCAAUCGAUAG----ACAAAAAACGUUAUGCAUU
......((((.(((......(((((.((..-...)).)))))(((..((((((..(.((((((((.....)))))))).)))).)))..)))----.........))).)))).. ( -30.00)
>DroYak_CAF1 16262 111 + 1
AAUUUCUGCAAAACAAAACUUUGCUUGCAA-AUUGCUGGCAACUAGAGGUGGUCACCUGUCGAUUGUUGUAGUUGGCAACACUAAUCGAUAGG---ACAAAAACCGUUAUGCCUU
.......(((.(((......(((((.((..-...)).))))).....(((.....(((((((((((((((.....))))))...)))))))))---......)))))).)))... ( -33.70)
>DroAna_CAF1 16206 94 + 1
-------UUAAAACAAAACUUUGCAUGCAA-AUUGCUGGCAACUAGAGAUGGAAGAGUGUUGUUGCAAGCAGUUGGCAACACUAAUCGAUAAGUGGAUACUA-------------
-------..................(((.(-((((((.(((((..((.((......)).))))))).))))))).))).((((........)))).......------------- ( -21.30)
>consensus
AAUU_CUGCAAAACAAAACUUUGCUUGCAA_AUUGCUGGCAACUAGAGGUGGUCAGCUGUCGAUUAUUGUAGUUGGCAACACUAAUCGAUAGG___ACAGAAAGCGUUAUGCAUU
.......(((.(((......(((((.(((....))).)))))..............((((((((((.(((.(....).))).)))))))))).............))).)))... (-17.93 = -20.43 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:55 2006