| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,514,356 – 10,514,466 |
| Length | 110 |
| Max. P | 0.996621 |
| Location | 10,514,356 – 10,514,466 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.64 |
| Mean single sequence MFE | -18.81 |
| Consensus MFE | -8.91 |
| Energy contribution | -9.13 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.47 |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.996621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10514356 110 - 22407834 -AUUA---------AUACCGUGUAACAACUUGAAGGCAUCUAUCUUUAUAAGAAAUACACAUGAUUACAAAAAAAUCAAAUUUCUAAACUCACAUUUGUCAAUACAAGUGCAAUUUAUUU -....---------.....(((((......((((((......)))))).......))))).(((((.......)))))..............(((((((....))))))).......... ( -13.62) >DroEre_CAF1 2678 102 - 1 UAUAAAUACGGUGUGUGCUAAU-----------------GUAUCUGUAUAACAAAUACACACGCUUACAACAAAAUCAAAUCUCUUAGCUCGCAUUUGUUCAGACAAGUGCGAU-UAUUU .........((((((((....(-----------------((.........)))....))))))))........................((((((((((....)))))))))).-..... ( -22.50) >DroYak_CAF1 2745 98 - 1 UAUUA--ACUGUGUAUGCUGUUC----------------AUAUCUAUAUAGCAAACAUACAUCAUUACAAAUAAAUCGAAUUUCUUAACUCGUAUUUGUUAAUACAAGUACGAU-UA--- .....--..(((((.((((((..----------------........)))))).)))))..............................((((((((((....)))))))))).-..--- ( -20.30) >consensus UAUUA__AC_GUGUAUGCUGUU_________________AUAUCUAUAUAACAAAUACACAUGAUUACAAAAAAAUCAAAUUUCUUAACUCGCAUUUGUUAAUACAAGUGCGAU_UAUUU .........................................................................................((((((((((....))))))))))....... ( -8.91 = -9.13 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:44 2006