Locus 3604

Sequence ID 2L_DroMel_CAF1
Location 10,491,944 – 10,492,036
Length 92
Max. P 0.542677
window5692

overview

Window 2

Location 10,491,944 – 10,492,036
Length 92
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 89.40
Mean single sequence MFE -19.88
Consensus MFE -18.06
Energy contribution -17.78
Covariance contribution -0.28
Combinations/Pair 1.10
Mean z-score -1.19
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.542677
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10491944 92 - 22407834
ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAAGAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA
.(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70)
>DroSec_CAF1 3319 92 - 1
ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAACAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA
.(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70)
>DroSim_CAF1 2851 92 - 1
ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA
.(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70)
>DroEre_CAF1 2980 91 - 1
UCCUCCGCCGGUUGAGCUGGCCGAC----AAGAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---CAAC
...((.(((((.....))))).)).----..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.30)
>DroYak_CAF1 2890 91 - 1
ACCUCCGCCGGUUGAGCUGGCCGAC----AAGAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---CGAA
...((.(((((.....))))).)).----.......((.(((((((.....)))))))((((......(((-----....)))......))))...---)).. ( -20.30)
>DroAna_CAF1 3642 103 - 1
ACCUCCGCCGGUUGAUCUGGCAGGCAGAGAACACAACAAAAAGUAUUAUAUGUACUUUGUGCAUUUGUUCGACUAUAAUAUGAUUCACAGCACACGACGACAA
..(((((((((.....))))).)).)).(((((...((.(((((((.....))))))).))....)))))................................. ( -20.60)
>consensus
ACCUCCGCCGGUUGAGCUGGCCGAC___GAAAAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA_____AAUAUGAUUCACAGCACACA___AGAA
...((.(((((.....))))).))...............(((((((.....)))))))((((......(((.........)))......)))).......... (-18.06 = -17.78 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:42 2006