Locus 3603

Sequence ID 2L_DroMel_CAF1
Location 10,482,669 – 10,482,789
Length 120
Max. P 0.641523
window5691

overview

Window 1

Location 10,482,669 – 10,482,789
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.58
Mean single sequence MFE -33.00
Consensus MFE -26.40
Energy contribution -26.24
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -1.48
Structure conservation index 0.80
SVM decision value 0.22
SVM RNA-class probability 0.641523
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10482669 120 - 22407834
GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCGGGGUCUCUGUAGUUUAUCUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGUCUUCUUGGAAUCAAAGGACCU
..((((....(((((((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))...............((((....)))).)))))...)))).... ( -35.80)
>DroSec_CAF1 10724 120 - 1
GACCUUAUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCAGGGUCUCUGUAGUUUAACUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGCCUUCUUGGAAUCAAAAGACCU
...(((....(((((((.((((((((..(((((((((((((.......)))))))).)))))...)))))))).))...............((((....)))).)))))....))).... ( -31.60)
>DroSim_CAF1 11062 120 - 1
GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCAGGGUCUCUGUAGUUUAACUUGCAUUCAGAACAUUGUGGAUCGGAAGUUGCCUUCUUGGAAUCAAAAGACCU
...(((....(((((((.((((((((..(((((((((((((.......)))))))).)))))...)))))))).)).........((..(....)...))....)))))....))).... ( -34.00)
>DroEre_CAF1 14875 120 - 1
UACCUUGUAUUUCCAUGCGUGCAAGUACAUUAUGAGGUCCUUUGUGCCGGGAUCUCGGUAGUUUAUCUUGCAUUCAGAACAUUGAGGGUCCGAAGUUGUCUUUUUUGGAUCAAAGGACCU
..((((.........((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))..........(((((((((.......))))))))).)))).... ( -36.80)
>DroYak_CAF1 11514 120 - 1
AACCCUGUAUUUCCAAGCAUGCAAGUACAUGAUGAGAUCCUUUGUGCCGGGGUCCCUGUAGUUUAUCUUGCAUUCAGAACAUUGUGGGUCCGAAGUUGUCUUUUUUGGAUCGAAUGAUCU
................(.(((((((((.((...(.((((((.......)))))).)....)).)).))))))).)(((.((((...(((((((((.......))))))))).)))).))) ( -26.80)
>consensus
GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCGGGGUCUCUGUAGUUUAUCUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGUCUUCUUGGAAUCAAAAGACCU
...(((....(((((((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))...............((((....)))).)))))....))).... (-26.40 = -26.24 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:41 2006