Locus 36

Sequence ID 2L_DroMel_CAF1
Location 159,350 – 159,447
Length 97
Max. P 0.874989
window54

overview

Window 4

Location 159,350 – 159,447
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 93.22
Mean single sequence MFE -13.29
Consensus MFE -12.05
Energy contribution -12.01
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.36
Structure conservation index 0.91
SVM decision value 0.89
SVM RNA-class probability 0.874989
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 159350 97 - 22407834
UUUAAUUUUUAUCAUUCAGUAGGCUUUUCUCGUUGAUCAAUUUACUUUUGCCUGUUU-UUUCUUGUAUUUUACUGUAUUUCGAUUAACGCUUGCAAUA
..................((((((.......(((((((.(..(((...(((..(...-...)..))).......)))..).))))))))))))).... ( -12.91)
>DroSec_CAF1 5798 96 - 1
UUAAAUUUUUAUCAUUCAGUAGGCUUUUCUCGUUGAUCAAUUUACUUUUGCCUGUUU--UUCUUGUAUUUUACUGUAUUUCGAUUAACGCUUGCAAUA
..................((((((.......(((((((.(..(((...(((..(...--..)..))).......)))..).))))))))))))).... ( -12.71)
>DroSim_CAF1 5723 96 - 1
UUAAAUUUUUAUCAUUCAGUAGGCUUUUCUCGUUGAUCAAUUUACUUUUGCCUGUUU--UUCUUGUAUUUUACUGUAUUUCGAUUAACGCUUGCAAUA
..................((((((.......(((((((.(..(((...(((..(...--..)..))).......)))..).))))))))))))).... ( -12.71)
>DroEre_CAF1 5784 98 - 1
UUAAAUUUUUAUCAUUCAGUAGGCUUUUCUGCUUGAUCAAUUUACUUUUGCCUGUUUUUUUCUUGUAUUUUAUUGUAUUUCGAUUAACGCUUACGAUA
.((((((...((((...((((((....)))))))))).))))))..........................(((((((...((.....))..))))))) ( -10.30)
>DroYak_CAF1 5751 96 - 1
UUGAAUUUUUAUAAUUCAGUAGGCUUCCUU-GUUGAUCAAUUUACUUUUGCCUGUUU-UUGCUUGUAUUUUAUUGUAUUUCGAUUAACGCUUACGAUA
.((((((.....))))))((((((......-(((((((.(..(((...(((..((..-..))..))).......)))..).))))))))))))).... ( -17.80)
>consensus
UUAAAUUUUUAUCAUUCAGUAGGCUUUUCUCGUUGAUCAAUUUACUUUUGCCUGUUU_UUUCUUGUAUUUUACUGUAUUUCGAUUAACGCUUGCAAUA
..................((((((.......(((((((.(..(((...(((..(.......)..))).......)))..).))))))))))))).... (-12.05 = -12.01 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:51 2006