Locus 3598

Sequence ID 2L_DroMel_CAF1
Location 10,478,123 – 10,478,223
Length 100
Max. P 0.570356
window5683

overview

Window 3

Location 10,478,123 – 10,478,223
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -24.40
Consensus MFE -13.65
Energy contribution -13.58
Covariance contribution -0.08
Combinations/Pair 1.25
Mean z-score -2.03
Structure conservation index 0.56
SVM decision value 0.07
SVM RNA-class probability 0.570356
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10478123 100 - 22407834
------GUACCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU
------.......(((((((.....)))))))((((((....(((((((..--(((..--.(((((((....))))))))))----------..)))))))((.......)))))))).. ( -22.20)
>DroSec_CAF1 6462 100 - 1
------ACCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGCGCGAUUGGAGCUGCUGCAU
------.......(((((((.....)))))))((((((....(((((((..--(((..--.(((((((....))))))))))----------..)))))))((.......)))))))).. ( -24.70)
>DroSim_CAF1 6161 100 - 1
------AGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUCGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU
------.((....(((((((.....)))))))(((((.((((((((.((((--(.((.--..)).))))...((((......----------.))))).))))))))...))))).)).. ( -23.80)
>DroEre_CAF1 9633 106 - 1
UAAUGCAGCCCUAAUUAAUUGUUUAAAUUAAUCCAGCAAAUUGCAUUUGCG--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU
..(((((((....(((((((.....)))))))..(((.(((((((((((.(--(((..--.(((((((....))))))))))----------).)))..))))))))...)))))))))) ( -26.00)
>DroWil_CAF1 24058 120 - 1
GUAUGCAUCUUCAAUUAAUACUUUUAAUUGAUGGCACAAAUUGCAUUUACUUGAUUCCAGUUAAUUUACUUUUUAAUUAUGUGCUAAUACGGUUUUAAUGUGCAAAUGCAGUUGUCGAAU
...(((....((((((((.....))))))))..)))..((((((((((((((((..((((((((........))))))..(((....)))))..)))).)))..)))))))))....... ( -24.10)
>DroYak_CAF1 7200 106 - 1
UAAUUCAGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--GCUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGCGCGAUUGGAGCUGCUGCAU
.............(((((((.....)))))))((((((....((....)).--(((((--..((((.((..(((((......----------.))))).))..))))))))))))))).. ( -25.60)
>consensus
______AGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU__ACUCC__CUGAUUAGCUUUUUAAUUAAGU__________UUUAAGUGUGCGAUUGGAGCUGCUGCAU
.............(((((((.....)))))))((((((..((.((.((((...(((...........((((.......))))..............)))..)))).)).)).)))))).. (-13.65 = -13.58 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:32 2006