Locus 3592

Sequence ID 2L_DroMel_CAF1
Location 10,473,548 – 10,473,664
Length 116
Max. P 0.645233
window5673

overview

Window 3

Location 10,473,548 – 10,473,664
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 94.48
Mean single sequence MFE -26.28
Consensus MFE -22.46
Energy contribution -22.34
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.23
SVM RNA-class probability 0.645233
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10473548 116 - 22407834
CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAUCUCUCACUAAAUUUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC
..((((.(((...((((((((........((((....))))........))))))))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -28.29)
>DroSec_CAF1 2035 116 - 1
CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAAAAUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGAUGAUUUCGAGAUCUGGGGAC
..((((.(((...(((...(((((.........)))))(((......)))....)))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -24.10)
>DroSim_CAF1 1763 116 - 1
CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAAAAUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUCGAGAUCUGGGGAC
..((((.(((...(((...(((((.........)))))(((......)))....)))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -24.90)
>DroEre_CAF1 2008 115 - 1
CGAGCGCACAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAA-GUGUUGUUGUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC
................................((((((((((...(((....-))).....))))))))))..((((.(((((...(((((....)))))....)))))))))... ( -29.50)
>DroYak_CAF1 2059 115 - 1
CGAGCGCACAUAUACAAAUUUUCCUAUAAAUAUAAAAGUAGCUCUCACUAAA-GUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUCAGAUCUGGGGAC
................................((((((((((...(((....-)))..))...))))))))..((((.((((((..(((((....)))))..).)))))))))... ( -24.60)
>consensus
CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAA_AUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC
................................(((((((((.....((.......)).....)))))))))..((((.(((((...(((((....)))))....)))))))))... (-22.46 = -22.34 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:22 2006