| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,471,627 – 10,471,725 |
| Length | 98 |
| Max. P | 0.606456 |
| Location | 10,471,627 – 10,471,725 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.41 |
| Mean single sequence MFE | -50.68 |
| Consensus MFE | -23.64 |
| Energy contribution | -23.08 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10471627 98 + 22407834 CCGGAGCUGUCCGUUGGGCCA---UUUGCACGGGC------ACCUGGACGGGCACUUGAGCCGUCGUCUGCUGGUUGGCCAAAUGGC--------CAGCAGUUGCUCCUCCGGUG----- ((((((.(((((((((((((.---........)))------.))..))))))))...((((......((((((((((......))))--------))))))..))))))))))..----- ( -45.20) >DroSec_CAF1 150 98 + 1 CCGGAGCGGUCCGUUGGGCCA---UUUGCACGGGC------ACCUGGACGGGCACCUGGGCCGCCGUCUGUUGGUUGGCCAAAUGGC--------CAGCAGGUGCUCCUCCGGUG----- ((((((.(((((...))))).---.......((((------((((((((((((......))..))))))....(((((((....)))--------))))))))))))))))))..----- ( -53.30) >DroEre_CAF1 153 104 + 1 CAGGAGCUGCCCGCUGGGUCA---UCUGCACCGGCACCGGCACCGGGAAGGGCACCUGGGCAGCCGCCUGCUGGGUGGCCAAGUGGC--------CAGCCGGGGCUCCUCCAGUG----- .((((((((((((((((((..---...)).))))).(((....)))...))))....((((....)))).((((.(((((....)))--------)).)))))))))))......----- ( -56.00) >DroWil_CAF1 198 109 + 1 GCUGUGAUGGUCGCUGGACUACGCUGGGAACUGGC------ACCGGCACAGGCACUUGUGACGCCUGCUGCUG-----CAAAGCGGCAUGCGGAGCAGCAGGUCCAGGUCCGGAGCCAGC ...(((.(((((....))))))))......(((((------.((((.((.((.((((((..(((.(((((((.-----...))))))).))).....))))))))..)))))).))))). ( -51.00) >DroYak_CAF1 153 98 + 1 CAGGAGCUGCCCGCUGGGUCA---UCUGCACCGGC------ACCUGGACAGGCACUUGGGCAGCCGUCUGUUGGGUGGCCAAGUGGC--------CAGUCGGUGCUCCUCCAGUG----- .((((((.(((.(((((((..---...)).)))))------.....(((.(((((((((.((.(((.....))).)).)))))).))--------).))))))))))))......----- ( -47.90) >consensus CCGGAGCUGCCCGCUGGGCCA___UCUGCACCGGC______ACCUGGACGGGCACUUGGGCCGCCGUCUGCUGGGUGGCCAAGUGGC________CAGCAGGUGCUCCUCCGGUG_____ ..(((((...(((((.(((((......(((((((........))))....(((.........)))...)))....))))).))))).........(....)..)))))............ (-23.64 = -23.08 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:21 2006