Locus 3590

Sequence ID 2L_DroMel_CAF1
Location 10,470,155 – 10,470,245
Length 90
Max. P 0.764892
window5671

overview

Window 1

Location 10,470,155 – 10,470,245
Length 90
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 78.85
Mean single sequence MFE -21.37
Consensus MFE -15.08
Energy contribution -16.67
Covariance contribution 1.58
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value 0.51
SVM RNA-class probability 0.764892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10470155 90 + 22407834
--------------UUAUCUCAGAUGGAUACUUGUGAAUCAUUUCAAUUAGUCGAUCAAUAGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA
--------------........(((.(((.....((((....))))....))).)))....((((....(((((.....((....))...)))))....)))). ( -18.10)
>DroSec_CAF1 6428 104 + 1
GAAUUUUCAAGGGUUUAUCUCAGUUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUGGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA
((.....((((((((...(((((((((.......((((....))))....(((((...........)))))..))))))))).))))))))......))..... ( -25.70)
>DroSim_CAF1 6828 92 + 1
GAAUUUUCAAGCGCUUAUCUCAGAUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUAGAUUUUAGGC------------AGCCUUUGUUGCAAUCAAUCA
......................(((((((((...((((....))))..)))))))))....((((....((------------(((....)))))....)))). ( -20.30)
>consensus
GAAUUUUCAAG_G_UUAUCUCAGAUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUAGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA
......................(((((((((...((((....))))..)))))))))....(((...((((.(((.....))).))))..)))........... (-15.08 = -16.67 +   1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:20 2006