Locus 3589

Sequence ID 2L_DroMel_CAF1
Location 10,467,928 – 10,468,027
Length 99
Max. P 0.790670
window5670

overview

Window 0

Location 10,467,928 – 10,468,027
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -18.48
Consensus MFE -16.46
Energy contribution -16.90
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.32
Structure conservation index 0.89
SVM decision value 0.59
SVM RNA-class probability 0.790670
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10467928 99 - 22407834
UUAAACGCUAACUCGUUGCGAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGAAUCUGAAGUUGAUCAAAACUGGCAA
.((((((((..((((...))))..))))))))................................(((((((...(((.......)))....))))))). ( -19.60)
>DroSec_CAF1 4167 99 - 1
UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA
...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). ( -19.60)
>DroSim_CAF1 4469 99 - 1
UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA
...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). ( -19.60)
>DroEre_CAF1 4086 98 - 1
AUAAACGCAAACUCGUUGCCAGCUGGUGUUUACUGCUGAAACUAAACAA-AAUAAACAAUUACCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA
......((((.....))))((((.(((....)))))))...........-..............(((((((...(((.......)))....))))))). ( -16.50)
>DroYak_CAF1 4256 99 - 1
AUAAACGCAAACUUGUUGCCAGCAGGUGUUUACUGCUCAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCUCAUCUCAAGUUGAUCAAAACUGGCAA
......((((.....)))).(((((.......)))))...........................(((((((...(((.......)))....))))))). ( -17.10)
>consensus
UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA
...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). (-16.46 = -16.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:19 2006