| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,467,708 – 10,467,814 |
| Length | 106 |
| Max. P | 0.591716 |
| Location | 10,467,708 – 10,467,814 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.64 |
| Mean single sequence MFE | -15.42 |
| Consensus MFE | -3.37 |
| Energy contribution | -5.78 |
| Covariance contribution | 2.41 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.22 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10467708 106 - 22407834 ACUGAAGAAAUAGUUUUCUAAACCAUAAAUUAAACAUUUCAUUUUCCCCUACUCUACAUCCGGCAAUAAAUUAGAAA-----UCUAAAACGUUCAAUAUUUCUUUAGGUUU--------- .(((((((((((((((...............))))...................................((((...-----.)))).........)))))))))))....--------- ( -12.96) >DroSec_CAF1 3944 120 - 1 ACUGAAGAAAUAGUUUUCGAAACCAUAAGUUAAACAUUUCAUUUUCCCCUACUCUACAUCCGGCAAUAAAUUAGAAAUUCUAUCUGAAACAUUCAAUAUUUCUUUAGGUUUCUAAAAACA .(((((((((((((((....(((.....)))))))...................................(((((.......))))).........)))))))))))((((....)))). ( -13.70) >DroSim_CAF1 4242 120 - 1 ACUGAAGAAAUAGUUUUCGAAGCCAUAAAUUAAACAUUUCAUUUUGCCCUACUCUACAUCCGGCAAUAAAUUAGAAAUUCUAUCUGAAACGUUCAAUAUUUCUUUAGGUUUCUAAAAACA .(((((((((((.....((........................(((((.............)))))....(((((.......)))))..)).....)))))))))))((((....)))). ( -20.02) >DroEre_CAF1 3905 90 - 1 ------------------AAGCCCGUAAAUUAAACAUUUAAUUUCGCAGUAAUUUACAUCCGGCAAUAAAUAAGAUAUUCCAUCUGAAAUGUUA---AUUUCUUUACGUUU--------- ------------------..(((.((((((((.................))))))))....)))........((((.....))))(((((....---))))).........--------- ( -10.23) >DroYak_CAF1 3993 120 - 1 ACUAAAGAAAUAGUUCUCAAGCUCAUAAAUUAAACAUUUCAUUUCGAAUUUCAUUACAUCCGGUAAUAAAUUAGAAAUUCGAUCUGAAACGUUCAAUAUUUCAUUACAUUUUCCAAAACA ......((((((((......))..........(((.(((((..((((((((((((((.....)))))......)))))))))..))))).)))...)))))).................. ( -20.20) >consensus ACUGAAGAAAUAGUUUUCAAAACCAUAAAUUAAACAUUUCAUUUUGCCCUACUCUACAUCCGGCAAUAAAUUAGAAAUUCUAUCUGAAACGUUCAAUAUUUCUUUAGGUUU___AAAACA .(((((((((((............................................(....)........(((((.......))))).........)))))))))))............. ( -3.37 = -5.78 + 2.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:18 2006