| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,465,247 – 10,465,339 |
| Length | 92 |
| Max. P | 0.855323 |
| Location | 10,465,247 – 10,465,339 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.72 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -15.90 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10465247 92 - 22407834 GUGCAUAUGGAUGAGGACAUUGUAGUUGUAAAUAAGCCAGCAUCGAUACCUGUAAGUGGCUUAAACGACCGCCAUGUUACA-CAUUUA--AUA------------------------CA- .......((((((..(((((.(..(((((...((((((((((........)))...))))))).)))))..).)))))...-))))))--...------------------------..- ( -23.40) >DroVir_CAF1 4376 106 - 1 GUGCAUAUGGAUGAGGACAUUGUGGUUGUUAAUAAGCCAGCCUCUAUACCCGUAAGUGGCUUAAACGACCGCCAUAUUACA-UAAACU--AUGCAUU------AGUCUAAU-----AACU (((((((.(.(((..((.((.(((((((((..(((((((..((.(((....))))))))))))))))))))).)).)).))-)...))--)))))).------........-----.... ( -26.30) >DroGri_CAF1 5875 100 - 1 GUGCAUAUGGAUGAGGACAUUGUGGUUGUUAAUAAACCGGCCUCUAUACCCGUAAGUGGCUUAAACGACUGCCAUAAAGCA-UAAACU--G------------AGUCAUUU-----AUCU ((((.(((((..((((......(((((.......))))).)))).....))))).(((((..........)))))...)))-).....--.------------........-----.... ( -22.40) >DroWil_CAF1 1424 105 - 1 GUGCAUAUGGACGAAGACAUUGUGGUUGUAAAUAAGCCGGCAUCUAUACCCGUAAGUGGCUUUAACGACCGCCAUAAAAUA-AUUCUA--AGA-----------ACC-AUGCACAUACAU (((((((((........))).((((((((....(((((((........))(....).)))))..)))))))).........-......--...-----------...-))))))...... ( -25.90) >DroMoj_CAF1 4325 118 - 1 GUGCAUAUGGAUGAGGACAUUGUGGUUGUUAAUAAGCCAGCCUCUAUACCAGUAAGUGGCUUAAACGACUGCCAUAUUACAAUCGAUU--AUGCGUUUCUAUGAAUCUAUAAAUCUAGAU ..((((((.(((...((.((.(..((((((..(((((((....((.....))....)))))))))))))..).)).))...))).).)--))))..........(((((......))))) ( -27.60) >DroAna_CAF1 1408 94 - 1 GUGCAUAUGGAUGAGGACAUAGUAGUUGUAAAUAAGCCAGCAUCGAUACCUGUAAGUGGCUUAAACGACUGCCAUUUUACA-CAUUUUCUAUA------------------------CA- (((..((((........))))((((((((...((((((((((........)))...))))))).)))))))).......))-)..........------------------------..- ( -22.00) >consensus GUGCAUAUGGAUGAGGACAUUGUGGUUGUAAAUAAGCCAGCAUCUAUACCCGUAAGUGGCUUAAACGACCGCCAUAUUACA_UAUAUU__AUA____________UC_AU______ACAU (((.(((((((((....))))((((((((...(((((((.................))))))).))))))))))))))))........................................ (-15.90 = -16.68 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:17 2006