Locus 3586

Sequence ID 2L_DroMel_CAF1
Location 10,463,950 – 10,464,064
Length 114
Max. P 0.737418
window5667

overview

Window 7

Location 10,463,950 – 10,464,064
Length 114
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 74.30
Mean single sequence MFE -26.64
Consensus MFE -16.86
Energy contribution -16.62
Covariance contribution -0.25
Combinations/Pair 1.32
Mean z-score -1.34
Structure conservation index 0.63
SVM decision value 0.44
SVM RNA-class probability 0.737418
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10463950 114 + 22407834
GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGGUAGUGCACUUUGCACUCAUAGCAAUGCUCAUCUACUGUCACCUUGCCCACAUUGCAUCCACCUCCAUUC---AGU
(.((((((...........(((((.........)))))(((((((.(((..((((.......)))))))....))))))).............)))))).)..........---... ( -25.30)
>DroGri_CAF1 3831 113 + 1
GCGUGCAAAUACAUGACAAGGUCCUUUGGCUUUGGGUCCCGGUAGUGCACUUUGCACUCAUAACAAUGUUUAUCGAUAACAACUUUAUCGG-AUG---CCACACCCAUAUCCAAAGG
.((((......)))).......(((((((...(((((...((((((((.....))))...............(((((((.....)))))))-.))---))..)))))...))))))) ( -33.40)
>DroSim_CAF1 155 114 + 1
GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGGUAGUGCACUUUGCACUCGUAGCAAUGCUCAUCUACUGUCACCUUGCCCGCAUUGCAUCCACCUCCGCUC---AGU
(((((((((..((((((..(((((.........)))))...))))))...))))))).....(((((((.....................)))))))..........))..---... ( -30.30)
>DroWil_CAF1 154 110 + 1
GCAUGCAGAUACAUUACUAGAUCCUUGGCCUUUGGAUCACGAUAGUGAACUUUACAUUCAUAACAAUGCUUAUCAAUAGUUAUUUUAUCUG----ACUUCAAGCCCACAUC---AAU
((.((((((((....(((((((((.........)))))..(((((((((.......))))).........))))..)))).....))))))----....)).)).......---... ( -17.30)
>DroYak_CAF1 157 114 + 1
GCGUGCAGAUACAUUAUAAGGUCCUUUGAUUUCGGAUCACGAUAGUGCACUUUGCACUCGUAGCAAUGCUCAUCCACUGUUACCUUGUUCACAUUGCAUCCACCUGCACUC---AAU
(.((((((...........(((((.........)))))((((..((((.....)))))))).((((((..((.............))....))))))......)))))).)---... ( -29.22)
>DroAna_CAF1 148 114 + 1
GCAUGCAGAUACAUUAUAAGGUCCUUCGACUUUGGAUCGCGAUAGUGAACUUUGCACUCGUAGCAGUGCUCAUCAACGGUGACCUUGUUCAGUUUUGACCCACUCUCACCC---CCA
...((((((..((((((..(((((.........)))))...))))))...))))))...((((.((((....((((.(.(((......))).).))))..)))))).))..---... ( -24.30)
>consensus
GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGAUAGUGCACUUUGCACUCAUAGCAAUGCUCAUCAACUGUCACCUUGUCCACAUUGCAUCCACCCCCACUC___AGU
(.(((((((..((((((..(((((.........)))))...))))))...))))))).).......................................................... (-16.86 = -16.62 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:16 2006