| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,461,310 – 10,461,401 |
| Length | 91 |
| Max. P | 0.651813 |
| Location | 10,461,310 – 10,461,401 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.00 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10461310 91 + 22407834 AUCAGAUUUUCAAGC-CAAAUUACUUCUAA-CAGGUCGCGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGAUACGUGGAGUGUGAAAAUCAAC ....((((((((...-.....((((((..(-(..(((((((..((((..........))))....)))))))..))))))))))))))))... ( -23.00) >DroSec_CAF1 2872 91 + 1 AUCGGAUUUUCAUGA-CAAAUUACUUCUUA-CAGGUCGCGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGAUACGUGGAGUGUGAAAAUCAAC ....(((((((((..-......(((((..(-(..(((((((..((((..........))))....)))))))..))))))))))))))))... ( -23.20) >DroSim_CAF1 2877 91 + 1 AUCAGAUUUUCAUGA-CAAAUUACUUCUUA-CAGGUCGCGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGAUACGUGGAGUGUGAAAAUCAAC ....(((((((((..-......(((((..(-(..(((((((..((((..........))))....)))))))..))))))))))))))))... ( -23.40) >DroEre_CAF1 2879 91 + 1 AUCAGAUUUUCAAGC-CAAAUUACUUCUUA-CAGGUCGUGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGAUACGUGGAGUGUGAAAAUCAAC ....((((((((.((-.......((((((.-...(((....)))....))))))........(((.((.....))))).)).))))))))... ( -22.50) >DroYak_CAF1 2899 92 + 1 AUCAGAUUCUCAGGCCCAAAUUACUUCUUA-CAGGUCGCGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGACACGUGGAGUGUGAAAAUCAAC ....((((.(((.(((((.....((.....-.))(((((((..((((..........))))....)))))))...))).)).))).))))... ( -24.30) >DroMoj_CAF1 2875 90 + 1 CUAUUAU--ACUAGC-UAAUUUGUUUUUCAUCAGGCCGCGAAAUGUUAAAACGUCGGCGCAAUCAUCGUGAAACGUGGAACGUUAAAAUUCAC .......--....((-....(((........)))((((((...........)).)))))).......((((((((.....))).....))))) ( -12.40) >consensus AUCAGAUUUUCAAGC_CAAAUUACUUCUUA_CAGGUCGCGAGAUGAUCAAGAGGAAAAUCAACCAUCGCGAUACGUGGAGUGUGAAAAUCAAC ....((((((((.........((((((.......(((((((..((((..........))))....)))))))....))))))))))))))... (-17.62 = -17.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:15 2006