Locus 3584

Sequence ID 2L_DroMel_CAF1
Location 10,458,439 – 10,458,530
Length 91
Max. P 0.565892
window5665

overview

Window 5

Location 10,458,439 – 10,458,530
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 77.61
Mean single sequence MFE -28.87
Consensus MFE -12.24
Energy contribution -12.52
Covariance contribution 0.28
Combinations/Pair 1.43
Mean z-score -2.16
Structure conservation index 0.42
SVM decision value 0.06
SVM RNA-class probability 0.565892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10458439 91 - 22407834
ACGGUCUUCAGCCAUCCCACAUCGUCAUGUGUGUGGGCCACCAGGUGCACGUUCAACAUGUUGGGUUUGGUUGGAUGGCAGCUCUGAAAAA
...(((((((((((.(((((((.((..((..((((.(((....))).))))..))))))).))))..)))))))).)))............ ( -32.40)
>DroVir_CAF1 1 85 - 1
ACAGUCUUCAGCCAUCCAACGUCGUCGUGGGUGUGUGCUAUUAGAUGCACAUUUAGCAUAUUUGGUUUCGUCGGAUGACAGCUCU------
...(((....((((((((.((....))))))))(((((........)))))....))..((((((.....)))))))))......------ ( -20.30)
>DroGri_CAF1 1 91 - 1
ACCGUCUUUAGCCAGCCAACGUCAUCAUGGGUAUGCGCUAUAAGAUGCACAUUUAGCAUACCUGGUGGCGUUGGAUGACAACUCUGAAAAA
...(((.........((((((((((((..(((((((((........)).......)))))))))))))))))))..)))............ ( -30.11)
>DroWil_CAF1 1 85 - 1
ACAGUUUUAAGCCAACCCACAUCGUCAUGGGUAUGAGCUAUAAGAUGUACAUUCAACAUAUUUGGCUUAGUGGGAUGGCAACUCU------
..........((((.((((((((......))).(((((((....((((.......))))...)))))))))))).))))......------ ( -26.60)
>DroMoj_CAF1 1 91 - 1
ACAGUUUUAAGCCAUCCAACAUCGUCGUGGGUGUGUGCGACAAUAUGCACAUUCAGCAUAUUGGGUUUCGUUGGAUGGCAGCUCUGAAAAA
.(((......((((((((((...(((((........)))))(((((((.......))))))).......))))))))))....)))..... ( -33.80)
>DroAna_CAF1 1 88 - 1
ACGGUCUUCAGCCAGCCCACAUCAUCGUGGGUGUGUGCCACAAGAUGCACGUUCAGCAUGUUGGGUUUUGUUGGGUGGCAGCUCUGAA---
.(((.(((((.(((((((((......))))))....(((.(((.((((.......)))).)))))).....))).))).))..)))..--- ( -30.00)
>consensus
ACAGUCUUCAGCCAUCCAACAUCGUCAUGGGUGUGUGCUACAAGAUGCACAUUCAGCAUAUUGGGUUUCGUUGGAUGGCAGCUCUGAA___
...(((((((((...((((........((..((((((........))))))..))......))))....)))))).)))............ (-12.24 = -12.52 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:14 2006