Locus 358

Sequence ID 2L_DroMel_CAF1
Location 1,121,664 – 1,121,784
Length 120
Max. P 0.995701
window565

overview

Window 5

Location 1,121,664 – 1,121,784
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.59
Mean single sequence MFE -29.04
Consensus MFE -24.36
Energy contribution -24.52
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -2.47
Structure conservation index 0.84
SVM decision value 2.61
SVM RNA-class probability 0.995701
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1121664 120 - 22407834
GGAGAGCUGAAAAAUAAACGUACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACACUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA
(((((((((........((((......))))...((....((..(((((..((((((..((....)).))))))..))..)))..))...))..........)))))))))......... ( -28.80)
>DroSec_CAF1 8440 117 - 1
GGAGAGCUGAAAA---AACGAACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACGCUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCAAA
(((((((((....---.(((........)))...((....((..(((((..((((((..((....)).))))))..))..)))..))...))..........)))))))))......... ( -28.00)
>DroSim_CAF1 8354 117 - 1
GGAGAGCUGAAAA---AACGUACUUAAGCGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACGCUUUGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA
(((((((((....---......((.((((((.((((.....))))((((..((((((..((....)).))))))..))..)))))))).))...........)))))))))......... ( -32.20)
>DroEre_CAF1 8737 116 - 1
GGAGAGCUGAAAA---AACCUACUUAAACGUAAAUCACUUAGAUUGUAGUUUUCCCAUUGAAAAUCGCCGGCAAUUCCAUGCACACUUCGGAAAAUGCUA-ACAGCUUUCCGUUUUGAAA
(((((((((....---................((((.....))))(..((((((.....))))))..).((((.((((...........))))..)))).-.)))))))))......... ( -26.10)
>DroYak_CAF1 8814 117 - 1
GGAGAGCUGAAAA---AACGCACUUAAACGUAAAUCACUUAGAUUGUAGUUUUCCCAUAGGAAAUCUCCGGGAAUUCCAAGCACACUUCGGAAAAUAAUAAACAGCUUUCCGAUUUGUUU
(((((((((....---.........((((...((((.....))))...))))((((...(((....))))))).(((((((....))).)))).........)))))))))......... ( -30.10)
>consensus
GGAGAGCUGAAAA___AACGUACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACACUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA
(((((((((................((((...((((.....))))...))))((((...(((....))))))).(((((((....))).)))).........)))))))))......... (-24.36 = -24.52 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:51 2006