Locus 3579

Sequence ID 2L_DroMel_CAF1
Location 10,452,274 – 10,452,389
Length 115
Max. P 0.617918
window5658

overview

Window 8

Location 10,452,274 – 10,452,389
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 90.26
Mean single sequence MFE -24.46
Consensus MFE -18.08
Energy contribution -18.08
Covariance contribution 0.00
Combinations/Pair 1.25
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value 0.17
SVM RNA-class probability 0.617918
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10452274 115 + 22407834
AAUUGUUUUUUAGACCACAAAUUUUAUACCAAUUUUGCCUUUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGAAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAACUUCA
....((((((((((...((((............))))...))))))))))............(((........))).(((..(((((..(((((....))))).)))))..))). ( -21.20)
>DroSec_CAF1 1470 115 + 1
AAUAACUUUCUAGACCACAAAUUUUAUACCAAUUUUACCUCUUGAAAAGUCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAAGUUCA
......((((.(((....(((((.......)))))....))).))))((((((............))))))......(((..(((((..(((((....))))).)))))..))). ( -20.10)
>DroSim_CAF1 1249 115 + 1
AAUAACUUUCUAGACCAGAAAUUUUAUACCAAUUUUGCCUCUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUUUGCUAUUAAGCAGCAGCUAAGUUCA
......(((((.....))))).............((((.....((((((((((...((((..(((........))).))))))))))))))(((....))).))))......... ( -22.00)
>DroEre_CAF1 2167 115 + 1
AAUAGUUUUCUAGGCAGGAAAUUUUAUACUAAUUUUUCCUCUUGGAAAGCAAUAAAUUCCUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGGCAUUAAGCAGCAGCUAACUUCA
....((((((((((.((((((..(((...)))..))))))))))))))))..........(((((.((..(((((.((((((....)))))))).)))..))...)))))..... ( -31.40)
>DroYak_CAF1 2500 115 + 1
AAUAGUUUUCUAGACAAGAAAUUGUAUACUAAUUUUUCCUCUUGGAAAGCAAUCAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAGGCAGCAGCUAACUUCA
....((((((((((..((((((((.....))))))))..)).))))))))......((((..(((........))).)))).(((((..(((((....))))).)))))...... ( -27.60)
>consensus
AAUAGUUUUCUAGACCAGAAAUUUUAUACCAAUUUUGCCUCUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAACUUCA
....((((((((((...((((((.......))))))...)).))))))))............(((........))).(((..(((((..(((((....))))).)))))..))). (-18.08 = -18.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:07 2006