Locus 3577

Sequence ID 2L_DroMel_CAF1
Location 10,440,828 – 10,440,940
Length 112
Max. P 0.680475
window5654

overview

Window 4

Location 10,440,828 – 10,440,940
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.56
Mean single sequence MFE -23.58
Consensus MFE -19.62
Energy contribution -19.82
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.83
SVM decision value 0.30
SVM RNA-class probability 0.680475
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10440828 112 + 22407834
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUGUGAAGUUAUAGCAAUAUAAAAU--------
.........((((((...(....)((((((((..(((((........)))))..))(((((.(((....))).))))).))))))....))))))(((((....)))))...-------- ( -23.60)
>DroSec_CAF1 1200 120 + 1
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUAUGAAGUUAUAGCGACAUGAAAUAGUUAACU
.............((((.......((((((((..(((((........)))))..))(((((.(((....))).))))).))))))..(((((..((....))..)))))..))))..... ( -25.30)
>DroSim_CAF1 1204 120 + 1
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUUGAAGGGGCACUUGUGAAGUUAUAGCAAUAUAAAAUAGUUAACU
.............((((.......((((((..((.(((((((((((.((........)).))))))....))))).)).))))))..........(((((....)))))..))))..... ( -20.20)
>DroEre_CAF1 1191 105 + 1
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAGAUUGUGAAAUAUGUAGUAGGGGCACUUUUGAAGUUAUAGCAAU---------------
.......(((...(((.((((...((((((((......((((.......))))....((((.(((....))).))))))))))))...)))).))).))).....--------------- ( -24.40)
>DroYak_CAF1 1200 105 + 1
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGUAGGGGCACUUUUGAAGUUAUAGCAAU---------------
.......(((...(((.((((...((((((((......((((.......))))....((((.(((....))).))))))))))))...)))).))).))).....--------------- ( -24.40)
>consensus
CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUGUGAAGUUAUAGCAAUAU_AAAU________
.......(((...(((.((.....((((((((..(((((........)))))..))(((((.(((....))).))))).)))))).....)).))).))).................... (-19.62 = -19.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:03 2006