| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,426,777 – 10,426,892 |
| Length | 115 |
| Max. P | 0.759295 |
| Location | 10,426,777 – 10,426,892 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 88.99 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -22.61 |
| Energy contribution | -23.83 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10426777 115 + 22407834 UCAGUAUGUUUUUUCUCAAUUUUUUUCGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCACUUAUCGAUAUCGAUAGGCAGUGGCCAUGUUAUCAAACUUAUUC ...........................(((.(((((((........))))).........(((((((.((.(((((((....)))))))..)).)))))))..)).)))...... ( -22.90) >DroSec_CAF1 3057 112 + 1 UCGGUGUGAUUUUUUACCAAAUUUUUUUUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCUCUUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUA--- ..(((((((((((((((((..(((......)))..)))).((....))....))))))))))(((((.((((((((((....))))))).))).)))))...))).......--- ( -32.30) >DroSim_CAF1 3040 115 + 1 UCAUUGUGAUUUUUUACCAUACUUUUUGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAAGUGGCGGCUCCUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUAUUC ......((((((((((((((.((((.....))))))))).((....))....))))))))).(((((.((((.(((((....))))).).))).)))))................ ( -29.40) >consensus UCAGUGUGAUUUUUUACCAUAUUUUUUGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCUCUUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUAUUC .....((((((((((..........((....))(((((........))))).))))))))))(((((.((((((((((....))))))).))).)))))................ (-22.61 = -23.83 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:02 2006