Locus 3575

Sequence ID 2L_DroMel_CAF1
Location 10,426,343 – 10,426,434
Length 91
Max. P 0.523551
window5652

overview

Window 2

Location 10,426,343 – 10,426,434
Length 91
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -18.70
Consensus MFE -11.98
Energy contribution -12.02
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -1.68
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.523551
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10426343 91 + 22407834
AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA--UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAGUAAGAAUCUAU---GAAUUAA
.....(((((..(((((((((((((........))))))--))).........(((....((((....))))..))).))))..))---))).... ( -20.50)
>DroSec_CAF1 2612 94 + 1
AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUAUA--UGCCUAUGUAAAUACGAAAUCGAAACCGCGAAAUUAUGAAUCUUUCGCUAAUUAA
...(((((.....((((((((((....))))))((((((--....))))))....))))...))))).((((((.........))))))....... ( -15.20)
>DroSim_CAF1 2595 91 + 1
AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA--UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAUUAAGAAUCUAU---GAACUAA
.....(((((..(((((((((((((........))))))--)))................((((....))))......))))..))---))).... ( -19.50)
>DroEre_CAF1 2598 85 + 1
AUUGUUUUAUUUAUUCGCAUGCAUGGUUGUAUGUAUGUAUAAGCCAAUGUAAAUAUGAAAUCGUAACCGCGAA----A----CUAU---AGAUUAC
.....(((((...(((((.(((((((((((((....)))).)))).)))))..((((....))))...)))))----.----..))---))).... ( -18.00)
>DroYak_CAF1 2560 85 + 1
UUUGUUAU----AUUCGCAUGCAUGUUUGUAUGCAUGUGUAAGCCAAUGUAAAUAUGAAAUCGUAACCGCGAAAGUAA----CUAU---AGAUUAC
...(((((----.(((((((((((((......)))))))).............((((....))))...))))).))))----)...---....... ( -20.30)
>consensus
AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA__UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAGUAAGAAUCUAU___AAAUUAA
.............(((((.(((...(((((((.(((((........))))).)))))))...)))...)))))....................... (-11.98 = -12.02 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:01 2006