| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,422,344 – 10,422,464 |
| Length | 120 |
| Max. P | 0.600535 |
| Location | 10,422,344 – 10,422,464 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.22 |
| Mean single sequence MFE | -44.15 |
| Consensus MFE | -27.33 |
| Energy contribution | -26.92 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10422344 120 - 22407834 AGCUACUCUCAACGCAUUUGCCGCAGCGCGGCGGAGAUAGCAGUGGAAUCCUGGGAUUUCUGCUUCGCGAUAUCCGCGAGGAGGCAGCCGCCGCGGAGAAGAGGAAAUGUUGGUACUGCA .((((.((((........((((((...)))))))))))))).(..(....(..(.((((((.((((((....(((....)))(((....)))))))))....)))))).)..)..)..). ( -46.70) >DroPse_CAF1 1453 120 - 1 AGCUAUUAUCCACAGACCUCCCUCAACGCGGUGGCGACUCUAGCGGCAUUCUCGGCUUUCUACUGCGCGACAUUCGCAAGGAAGCCGUCGCCGCCAAGAAACAUAUAUGUGUCUAUUGCC .((...((..((((((......)).....(((((((((......((.....))((((((((..((((.......)))))))))))))))))))))............))))..))..)). ( -38.20) >DroSec_CAF1 1509 120 - 1 AGCUCCUCUCAACUCAUUUGCCGCAGCGCGGCGGAGAUAGCAGCGGCAUCCUGGGCUUUCUGCUUCGCGACAUCCGCGAGGAGGCAGCCGCCGCGGAGAAGAGGAAAUGUUGGUACUGCA .((((((((...(((.((((((((...)))))))).......(((((......((((.(((.(((((((.....)))))))))).))))))))).))).))))))...((....)).)). ( -50.50) >DroPer_CAF1 1258 120 - 1 AGCUAUUAUCCACAGACCUCCCUCAACGCGGUGGCGACUCUAGCGGCAUUCUCGGCUUUCUACUGCGCGACAUUCGCAAGGAAGCCGUCGCCGCCAAGAAACAUAAAUGUGUCUAUUGCC .((...((..((((((......)).....(((((((((......((.....))((((((((..((((.......)))))))))))))))))))))............))))..))..)). ( -38.20) >DroEre_CAF1 1440 120 - 1 AGCUCCUCUCAACUCAUUUGCCGCAGCGCGGCGGCGAUUGCAGCGGAAUCCUAGGCUUUCUGCUUCGUGACAUCCGCGAGGAGGCAGCCGCCGCGGAGAAGAGGAUAUGUUGGUAUUGCA ...((((((...(((....((....))((((((((....(.(((((((.(....)..))))))).).((...(((....)))..)))))))))).))).))))))............... ( -46.80) >DroYak_CAF1 1488 120 - 1 AGCUACUCUCAACUCAUUUGCCGCAGCGCGGCAGCGAUUCCAGUGGAGUCCUAGGCUUUCUGCUUCGCGACAUCCGAGAGGAGGCAGCUGCCGCUGAAAAGAGGAAAUGUUGCUACUGCA .((..(((((........((((((...))))))((((...(((.(((((.....))))))))..)))).......)))))..((((((..((.((....)).))....))))))...)). ( -44.50) >consensus AGCUACUCUCAACUCAUUUGCCGCAGCGCGGCGGCGAUUCCAGCGGAAUCCUAGGCUUUCUGCUUCGCGACAUCCGCGAGGAGGCAGCCGCCGCGGAGAAGAGGAAAUGUUGCUACUGCA .((......((((..............((((((((.........((...))...(((((((....((((.....))))))))))).))))))))..............)))).....)). (-27.33 = -26.92 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006