Locus 357

Sequence ID 2L_DroMel_CAF1
Location 1,116,365 – 1,116,463
Length 98
Max. P 0.873531
window564

overview

Window 4

Location 1,116,365 – 1,116,463
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 92.30
Mean single sequence MFE -28.62
Consensus MFE -21.76
Energy contribution -23.80
Covariance contribution 2.04
Combinations/Pair 1.03
Mean z-score -2.20
Structure conservation index 0.76
SVM decision value 0.88
SVM RNA-class probability 0.873531
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1116365 98 + 22407834
UCCAGGAAAU-UUGGCUUUGGUUCGAGUUACGCAAAUUUCGACAGUGGGAGAUUCCACUCGUUGACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU
....((((((-((.(((.((((..(((((..(((....(((((((((((....)))))).))))).)))))))))))).))).)).....))))))... ( -32.40)
>DroSec_CAF1 3141 99 + 1
UCCAGGAAAUUUUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGGUUCCACUCGUUAAGUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU
....(((((((((.(((.((((..(((((..(((...((.(((((((((....)))))).))))).)))))))))))).))).)))....))))))... ( -30.80)
>DroSim_CAF1 3146 99 + 1
UCCAGGAAAUUUUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGAUUCCACUCGUUAACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU
....(((((((((.(((.((((..(((((..(((.....(((..(((((....)))))))).....)))))))))))).))).)))....))))))... ( -29.70)
>DroEre_CAF1 3431 98 + 1
UCCAGGAAAU-UUAACUUUGGUUCGAGCUACGUGAAAUUCGACACUGGGAGAUUCCACUCAUUGACUUCAACUCACCAUGGCGAAAUCACGUUUCCACU
....(((((.-.......((((....))))(((((..((((.((.((((((......))).(((....)))....))))).)))).))))))))))... ( -21.20)
>DroYak_CAF1 3434 98 + 1
UGCAGGAAAU-UUGGCUUUGGUUCGAGUUACGCAAAAUUCGACACUGGGAGAUUCCACUCAGUGACUUCAACUCACCAUGGCGAAAUCACGUUUCCACU
....((((((-((.(((.(((((((((((......)))))))(((((((........)))))))..........)))).))).)).....))))))... ( -29.00)
>consensus
UCCAGGAAAU_UUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGAUUCCACUCGUUGACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU
....((((((.((.(((.((((..(((((..(((....(((((((((((....)))))).))))).)))))))))))).))).)).....))))))... (-21.76 = -23.80 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:50 2006