Locus 3569

Sequence ID 2L_DroMel_CAF1
Location 10,409,746 – 10,409,866
Length 120
Max. P 0.858759
window5643

overview

Window 3

Location 10,409,746 – 10,409,866
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.17
Mean single sequence MFE -36.63
Consensus MFE -36.33
Energy contribution -35.58
Covariance contribution -0.75
Combinations/Pair 1.11
Mean z-score -0.85
Structure conservation index 0.99
SVM decision value 0.82
SVM RNA-class probability 0.858759
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10409746 120 - 22407834
CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU
...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80)
>DroGri_CAF1 1761 120 - 1
CAAAGAUUAAACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGGAUCUUGGCUUUGACAUUUUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUACCCGUGAGGGUUU
..(((((((...(((...((((((((.(((.......))).))).)))))..))).....((((((.((.(((..((...))....))))).)))))).)))))))((((....)))).. ( -34.40)
>DroEre_CAF1 1783 120 - 1
CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGAUGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU
...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80)
>DroYak_CAF1 1004 120 - 1
CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU
...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80)
>DroMoj_CAF1 3888 120 - 1
CAAAGAUUAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGGAUCUUGGCUUUGACAUUCUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUACCCGUUAGGGUUU
..(((((((...(((...((((((((.(((.......))).))).)))))..))).....((((((.((.(((..((...))....))))).)))))).)))))))((((....)))).. ( -34.00)
>DroAna_CAF1 1884 120 - 1
CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU
...(((((((......)))))))(((((....)))))........(((((((((......((((...))))....)))).)))))(((((((....))).))))..((((....)))).. ( -38.00)
>consensus
CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU
...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. (-36.33 = -35.58 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:52 2006