Locus 3565

Sequence ID 2L_DroMel_CAF1
Location 10,394,162 – 10,394,282
Length 120
Max. P 0.654639
window5636

overview

Window 6

Location 10,394,162 – 10,394,282
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -48.50
Consensus MFE -43.07
Energy contribution -43.35
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.32
Structure conservation index 0.89
SVM decision value 0.25
SVM RNA-class probability 0.654639
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10394162 120 - 22407834
CUUCGUGGAAACCGUUCAGAAGCGUGGAGCCGCUGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCGAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC
....(..(...((((((......((((.(((((.......)))))))))............((((.(((((((((....))))).((((......)))))))))))).))))))..)..) ( -52.70)
>DroSec_CAF1 9113 120 - 1
CUUCGUGGAAACCGUACAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCAGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC
...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))))((((......)))).))))))).))..))))))). ( -48.90)
>DroSim_CAF1 9036 120 - 1
CUUCGUGGAAACCGUACAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC
...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))).((((......)))))))))))).))..))))))). ( -50.30)
>DroEre_CAF1 9571 120 - 1
CUUCGUGGAAACCGUUCAGAAACGAGGAGCAACAGUCAUUGCAGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGUGAUCACAUGCACGACUGGUGGAACGGCACUGC
((((((.(((....)))....)))))).....((((..((((.....))))...(((.((.((((.(((((((((....)))))).(((........)))))))))).))..))))))). ( -40.30)
>DroYak_CAF1 9696 120 - 1
CUUCGUGGAAACCGUUCAGAAGAGAGGAGCAGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGUGAUCACAUGCACGACUGGUGGAACGGCACUGC
....(..(...((((((.((.((.(...((.(((((....)))))..))....).)).)).((((.(((((((((....)))))).(((........)))))))))).))))))..)..) ( -44.40)
>DroAna_CAF1 7970 120 - 1
CUUCGUGGAGACCGUGCAGAAGCGCGGUGCCGCCGUCAUCGCGGCUCGCAAAAUGUCAUCCGCCAUGUCGGCCGCCAAGGCUGCCUGCGACCAUAUGCAUGACUGGUGGAAUGGCACUGC
....((((..(((((((....)))))))(((((.......)))))))))....((((((((((((.((((((.((....)).)))((((......)))).))))))))).)))))).... ( -54.40)
>consensus
CUUCGUGGAAACCGUUCAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC
...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))))(((........))).))))))).))..))))))). (-43.07 = -43.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006