| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,388,191 – 10,388,297 |
| Length | 106 |
| Max. P | 0.762173 |
| Location | 10,388,191 – 10,388,297 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.16 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -21.33 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10388191 106 + 22407834 AAUUCGCAUAAGCGCAGUGAACUAAAAUAGUUAAUAGAAGUGUCAUGCAUAUUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGGUUUACU-UUAGCUGUGCAU .....(((((.((..((((((((......................((((....)))).(((((((((.....))))).))))....))))))))-...))))))).. ( -28.00) >DroSec_CAF1 3113 106 + 1 AAUUCGCAUAAGCGCAGUGAACUAAAUUAGUUAAAAGAAGUGUCAUGCAUAUUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGGUUUACU-UUAGCUGUGCAU .....(((((.((..((((((((......................((((....)))).(((((((((.....))))).))))....))))))))-...))))))).. ( -28.00) >DroSim_CAF1 2996 106 + 1 AAUUCGCAUAAGCGCAGUGAACUAAAUUAGUUAAAAGAAGUGUCAUGCAUAUUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGGUUUACU-UUAGCUGUGCAU .....(((((.((..((((((((......................((((....)))).(((((((((.....))))).))))....))))))))-...))))))).. ( -28.00) >DroEre_CAF1 3179 106 + 1 AAUUCGCAUAAGCGCAGUGAACUAAAUUAGUUAAUAGAAGUGUCAUGCAUAUUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGUUUUACU-UUAUCUGUGCAU ...........((((((((((.((((...(((.............((((....)))).(((((((((.....))))).)))).)))..)))).)-))).)))))).. ( -24.80) >DroYak_CAF1 3219 106 + 1 AAUUCGCAUAAGCGCAGUGAACUAAAUUAGUUAAUAGAAGUGUCAUGCAUAAUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGGUUUACU-UGAGCUGUGCAU .....(((((.((.(((((((((......................((((....)))).(((((((((.....))))).))))....))))))).-)).))))))).. ( -28.30) >DroAna_CAF1 2777 107 + 1 AACUCCCGCAAACGCAGUGAAAAAUAUUAGUUAGUAACAGUGUCAUGCGUACUUACAAUGUGUAGAAUAAAAAUUUAUCGCAGAACAGUUCGUUAUUAGCUGUGCAU .......((....))............((((((((((((.(((..((((.........(((.....))).........))))..))).)..)))))))))))..... ( -18.77) >consensus AAUUCGCAUAAGCGCAGUGAACUAAAUUAGUUAAUAGAAGUGUCAUGCAUAUUUGCAAUGUGUAAACGAAGAGUUUAUCGCAAAACGGUUUACU_UUAGCUGUGCAU .....(((((.((..((((((((......................((((....)))).(((((((((.....))))).))))....))))))))....))))))).. (-21.33 = -21.70 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:34 2006