Locus 356

Sequence ID 2L_DroMel_CAF1
Location 1,111,179 – 1,111,279
Length 100
Max. P 0.679671
window563

overview

Window 3

Location 1,111,179 – 1,111,279
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 86.30
Mean single sequence MFE -23.27
Consensus MFE -21.35
Energy contribution -21.13
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.31
Structure conservation index 0.92
SVM decision value 0.30
SVM RNA-class probability 0.679671
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1111179 100 - 22407834
GAUACUCCGUGAUGGCCUGGAAAUGGAAAAUAGUUAAAGGAAAUUGGCAACGGAAGUGCUAAAUGGUUCCAUCAUCAGGGUUUUUCAUUACUUUCAUUGA
((....((.((((((((.......))............((((.((((((.(....)))))))....)))).)))))).))....)).............. ( -24.80)
>DroSec_CAF1 1215 92 - 1
GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCUAAAAUGUUCCAUCAUCAGGGUUUUUCCACACU--------
........(((.((((((((((.((((((((((((........(((....))))))))))......)))))))).))))......)))))).-------- ( -23.30)
>DroSim_CAF1 1100 92 - 1
GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCCAAAAUAUUCCAUCAUCAGGGUUUUUCCACACU--------
((....((.((((((((.......))............((((.((((((.......))))))....)))).)))))).))....))......-------- ( -21.70)
>consensus
GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCUAAAAUGUUCCAUCAUCAGGGUUUUUCCACACU________
((....((.((((((((.......))............((((.((((((.......))))))....)))).)))))).))....)).............. (-21.35 = -21.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:49 2006