Locus 3556

Sequence ID 2L_DroMel_CAF1
Location 10,364,814 – 10,364,911
Length 97
Max. P 0.588150
window5619

overview

Window 9

Location 10,364,814 – 10,364,911
Length 97
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.18
Mean single sequence MFE -25.03
Consensus MFE -13.59
Energy contribution -13.40
Covariance contribution -0.19
Combinations/Pair 1.23
Mean z-score -2.13
Structure conservation index 0.54
SVM decision value 0.11
SVM RNA-class probability 0.588150
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10364814 97 + 22407834
CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU
((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70)
>DroSim_CAF1 6589 97 + 1
CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU
((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70)
>DroYak_CAF1 6574 97 + 1
CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU
((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70)
>DroAna_CAF1 7610 120 + 1
UGUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAGUAACUCAAACAUUUCGCAUAUGUAUGUAUUAUAUGUGCGUAUGUAAUCAUGUGCUGUAAAUAGAAGACAUUUCCAGUUUUUAAU
.......((((((((.(((.((((((.....(((((((......((((..((((((((((.....)))))))))).)))).......))))))).......)))))).))))))))))). ( -38.02)
>consensus
CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU____ACAUCUCUUGUAU_________________GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU__CUGAU
((((((((((...((((.(((.((....)).))).)).......(((.....)))...................))...))))))))))............................... (-13.59 = -13.40 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:27 2006