| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,345,708 – 10,345,803 |
| Length | 95 |
| Max. P | 0.813145 |
| Location | 10,345,708 – 10,345,803 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.35 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -12.69 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.813145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10345708 95 + 22407834 -GUA--UUAGCUUUAUAAACUAC---AACUUUUAUCUUGUCUUCAGAAAUGGAUCCACUAUUGUUUUCGCUGAGAGUAAAGUUCUACCCUGCGGAUCCAUU -...--.................---.....................(((((((((((....))....((..((((.....)))).....))))))))))) ( -15.00) >DroSec_CAF1 1073 95 + 1 -UUA--UAAGCUUUAUAAACUAA---AACUUGUAUCUUGACUUCAGAAAUGGAUCCACUAUUAUUUUCGCUGAGAGUGAAGUUCUACCCUGCGGAUCCAUU -.((--((((.((((.....)))---).)))))).............(((((((((.........(((((.....)))))((........))))))))))) ( -20.90) >DroSim_CAF1 1043 95 + 1 -UUA--UUAUUUCUAUAAAUUCA---AACUUCAAUCUUGACUUCAGAAAUGGAUCCACUAUUAUUUUCGCUGAGAGUGAAGUUCUACCCUGCGGAUCCAUU -...--..((((((...((.(((---(.........)))).)).))))))((((((.........(((((.....)))))((........))))))))... ( -17.40) >DroEre_CAF1 1396 95 + 1 -GUA--UUAGCUCUAUAAACUGA---AACACAUUUGUUGUCUUCAGAAAUGGAUCCCCUAUUAUUUUCGCUGAGAGUGAAGUUUUACCCUGCGGAUCCAUU -...--.............((((---(..(((.....))).))))).(((((((((.........(((((.....)))))((........))))))))))) ( -21.50) >DroYak_CAF1 1038 95 + 1 -UUA--GCAGUUCUAUUAACUGA---AACUCAUUUGUUGUCCUCAGAAAUGGAUCCCCUACUAUUUUCGCUGCGAGUGAAGUUUUACCCUGCGGAUCCAUU -...--.............((((---(((......)))....)))).(((((((((.........(((((.....)))))((........))))))))))) ( -19.60) >DroPer_CAF1 7951 100 + 1 CUUAAGGUAUCUCCAUAUAUUUAUUUAAUUUC-CUUUGAUUAAAAGAACUGGAUCCCAUUUUAUUCUCAUUAAGAGUAAAAUUUUACCCCGCCGAUCCAUU .....((.(((((((....(((.(((((((..-....))))))).))).))))....((((((((((.....))))))))))...........)))))... ( -15.90) >consensus _UUA__UUAGCUCUAUAAACUAA___AACUUAUAUCUUGUCUUCAGAAAUGGAUCCACUAUUAUUUUCGCUGAGAGUGAAGUUCUACCCUGCGGAUCCAUU ...............................................(((((((((.(......((((((.....)))))).........).))))))))) (-12.69 = -13.28 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:19 2006