Locus 3550

Sequence ID 2L_DroMel_CAF1
Location 10,344,285 – 10,344,405
Length 120
Max. P 0.622982
window5610

overview

Window 0

Location 10,344,285 – 10,344,405
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -31.05
Consensus MFE -27.24
Energy contribution -26.92
Covariance contribution -0.31
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.88
SVM decision value 0.18
SVM RNA-class probability 0.622982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10344285 120 - 22407834
CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGAAAAG
((......)).........(((((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))..))))).... ( -31.00)
>DroSec_CAF1 932 120 - 1
CCAAAUAAGGACAACUGCCUCGCGAACAUAUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG
.......(((.(....)))).(((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))....))).... ( -30.40)
>DroSim_CAF1 891 120 - 1
CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG
.......(((.(....)))).(((....((((((((.....((((((((.(..((((((.(((.((....))))).))))))..)...)))).))))....))))))))....))).... ( -30.40)
>DroYak_CAF1 889 119 - 1
CCAAAUAAGGACAACUGCCU-GCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUUAUUGCCCAUGGGUGUCGUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAAGGUGGAUAG
((......))....(..(((-..(((((......)))))..((((((((.(..((((((...((((....))))..))))))..)...)))).)))).............)))..).... ( -32.40)
>consensus
CCAAAUAAGGACAACUGCCUCGCGAACAUGUGUUUGUUCAGAUGUGACUGUUGGUAUAUCGUAGCCCAUGGGUGCCAUAUACUGGAAAAGUCUGCAUAAAUUAAAUAUAAACGUGCAAAG
.......(((.(....))))((((((((......)))))..((((((((.(..((((((.((.(((....))))).))))))..)...)))).))))...............)))..... (-27.24 = -26.92 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:18 2006