Locus 3544

Sequence ID 2L_DroMel_CAF1
Location 10,336,806 – 10,336,902
Length 96
Max. P 0.500000
window5596

overview

Window 6

Location 10,336,806 – 10,336,902
Length 96
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 77.67
Mean single sequence MFE -26.75
Consensus MFE -18.03
Energy contribution -18.37
Covariance contribution 0.34
Combinations/Pair 1.22
Mean z-score -1.07
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10336806 96 + 22407834
UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAGGCACUGGCCAGAUCAGCCGGUACG-------UAUUAUUAU---CCGAC------
..((((((((....))((((.....(((.(....).)))...........((((((........))))))....))))....-------......)))---)))..------ ( -27.40)
>DroSec_CAF1 2688 96 + 1
UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAAGCACUGGCCAGAUCAGCCGGUACG-------UAUUAUUAC---CCGUU------
((((...(((....)))))))....(((.(....).)))...........((((((........))))))..(((.((((..-------......)))---).)))------ ( -24.60)
>DroSim_CAF1 2690 96 + 1
UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAGGCACUGGCCAGAUCUGCCGGUAAG-------UAUUAUAAU---UAGUA------
.((((..(((....)))((((((..((((.((.((.(.......).)).)).)))).(((....))).))))))))))....-------.........---.....------ ( -28.10)
>DroEre_CAF1 2407 93 + 1
UCCGGAUAGCCUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUGUGGCAGGCACUGGCUAGAUCAGCCGGUACG-------UAUUAUCUU---UC---------
...(((((((((......(.....)(((((((.((.(.......).)).)))))))))))(((((((.....)))))))...-------...))))).---..--------- ( -32.50)
>DroMoj_CAF1 855 103 + 1
UCCUGAAAGUGUAAAUUCGGAUCAUGCCACAGAUGCUGCUACAACUCAACUCUGGCAAGCAUUAGCUCGUUCUGCAGGUAAG-------UUCAAAUAAUUAUA--AUUGCAA
...((....((((((((.((((..((((...((((((((((...........)))).)))))).((.......)).)))).)-------))).)))..)))))--....)). ( -18.40)
>DroAna_CAF1 2366 103 + 1
CCCGGAUAGCCUGAGCUCGGACCAUGCCACAGAUGCAGCUACAACUCAACUUUGGCAAGCAUUGGCCCGAUCAGCAGGUAAGCCUACAUUAUUAUUAA---AUGUA------
...((...(((((...((((.((((((((.((.((.((......)))).)).))))).....))).))))....)))))...))((((((.......)---)))))------ ( -29.50)
>consensus
UCCGGAUAGCUUAAGCUCGGAUCACGCCACAGAUGCGGCAACUACUCAACUCUGGCAAGCACUGGCCAGAUCAGCCGGUAAG_______UAUUAUUAU___UCGUA______
.((((..(((....)))..((((..((((.((.((.(.......).)).)).)))).(((....))).))))..)))).................................. (-18.03 = -18.37 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:04 2006