Locus 3542

Sequence ID 2L_DroMel_CAF1
Location 10,336,305 – 10,336,419
Length 114
Max. P 0.505863
window5594

overview

Window 4

Location 10,336,305 – 10,336,419
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.49
Mean single sequence MFE -26.34
Consensus MFE -16.06
Energy contribution -16.62
Covariance contribution 0.56
Combinations/Pair 1.23
Mean z-score -1.34
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.505863
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10336305 114 - 22407834
UUCGAACAUGGAGGGGAAAUUACUAUUUUUUUGCUUAUAUCCAUUAAAACGGCAGCCGUUUCAAGCUGCUGCUGCAGAUUUUCAUAUUUCUCGAUAUCCGAGUCCUUUUG---CAGU
.......(((((((.((((.........)))).))....))))).....(((((((........)))))))(((((((...........((((.....))))....))))---))). ( -25.86)
>DroVir_CAF1 345 117 - 1
UUCGAACAUGGAGGCGAUAUGACAAUUUUUUUACUUAUAUCCAUAAGUACUGCUGCAGUCUCUAAUUGCUGUUGCAAAUUCUUGUAUUGUUCAACAUCUGAAACUUUAGUAUGUAGU
...(((((((((((((((((((............))))))).....(((....))).))))))).((((....))))..........))))).((((((((....)))).))))... ( -24.60)
>DroPse_CAF1 4926 114 - 1
UUCGAGCACGGAGGUGAAAUUACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCCAGUUGCUGUUGCAAGCUUUGAAACUGUUCAAUGUCAGAAUCUUUGUG---AAAU
......(((((((((..................(((((....)))))..((((.(((((.((.((((((....)).))))..)).))))).....).))).)))))))))---.... ( -23.40)
>DroWil_CAF1 76507 114 - 1
UUGGAGCAUGGAGGCGAAAUGACAAUUUUUUUGCUUAUAUCCAUAAGUACAGCGGCAGUCUCUAGUUGCUGCUGCAAAUUUCUAUAUUGUUCAAUUUCCGUUUCGUCUUC---CACC
........(((((((((((((..........(((((((....)))))))..((((((((........)))))))).......................))))))).))))---)).. ( -33.70)
>DroMoj_CAF1 330 117 - 1
UUCGAGCAUGGAGGUGAUAUGACAAUUUUUUUACUUAUAGUCAUAAGCACUGCCGCAGUUUCUAAUUGCUGCUGCAAAUUCUUAUAUUGCUCAAUAUCUGAAUCAUUGUUAUGUAAG
...(((((..((((((.((((((................))))))..)))(((.(((((........))))).)))....)))....)))))......................... ( -27.09)
>DroPer_CAF1 7621 114 - 1
UUCGAGCACGGAGGUGAAAUUACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCCAGUUGCUGUUGCAAGCUUUGAAACUGUUCAAUGUCAGAAUCUUUGUG---AAAU
......(((((((((..................(((((....)))))..((((.(((((.((.((((((....)).))))..)).))))).....).))).)))))))))---.... ( -23.40)
>consensus
UUCGAGCAUGGAGGUGAAAUGACAAUUUUUUUACUUAUAUCCAUAAGAACUGCUGCAGUCUCUAGUUGCUGCUGCAAAUUUUUAUAUUGUUCAAUAUCAGAAUCUUUGUG___AAAU
...(((((.((((((((((.........)))))))....))).........((.(((((........))))).))............)))))......................... (-16.06 = -16.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:02 2006