| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,330,911 – 10,331,010 |
| Length | 99 |
| Max. P | 0.528675 |
| Location | 10,330,911 – 10,331,010 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.27 |
| Mean single sequence MFE | -10.70 |
| Consensus MFE | -9.59 |
| Energy contribution | -9.70 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.90 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10330911 99 - 22407834 AACAAUCGUUUAAAUAAAGCAAAUACAAGAAAUUAUAAUUGCAAGUAACUUUGACUAUCUUCAGAUAUUUCUGUUACAAAAAUUUGCACCUACACCAAC .......((.(((((...((((.((.((....)).)).))))..(((((...((.((((....))))..)).)))))....))))).)).......... ( -12.80) >DroSec_CAF1 5833 99 - 1 AACAAUCGUUUAAACAAAGCAAAUACAAGAACUUAUAAUUGCAAGUAACUUUAACUAUCUUCAAAUAAUUCUGUUACACAAAUUUGCACCUGCACCAAC ..................((((((.(((..........)))...(((((.......................)))))....))))))............ ( -7.80) >DroSim_CAF1 5830 97 - 1 --CAAUCGUUUAAAUAAAGCAAAUACAAGAACUUAUAAUUGCAUGUAACUUUAACUAUCUUCAGAUAAUUCUGUUACACAAAUUUGCACCUACACCAAC --................((((((.(((..........)))..((((((...((.((((....)))).))..))))))...))))))............ ( -11.50) >consensus AACAAUCGUUUAAAUAAAGCAAAUACAAGAACUUAUAAUUGCAAGUAACUUUAACUAUCUUCAGAUAAUUCUGUUACACAAAUUUGCACCUACACCAAC ..................((((((.(((..........)))...(((((...((.((((....)))).))..)))))....))))))............ ( -9.59 = -9.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006