Locus 3535

Sequence ID 2L_DroMel_CAF1
Location 10,320,511 – 10,320,631
Length 120
Max. P 0.998927
window5580

overview

Window 0

Location 10,320,511 – 10,320,631
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.99
Mean single sequence MFE -28.35
Consensus MFE -24.80
Energy contribution -24.72
Covariance contribution -0.08
Combinations/Pair 1.22
Mean z-score -2.42
Structure conservation index 0.87
SVM decision value 3.29
SVM RNA-class probability 0.998927
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10320511 120 - 22407834
GUCACCUGCUUAAUCAGUUAGCAACGUUGACAAUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUUGUACUCAGUUUGCUGAUAAAAAACAUGAU
((((........((((((.(((..(((((((..........((...))...((....))..)))))))(((...(((..........)))..)))...))).))))))........)))) ( -24.69)
>DroSec_CAF1 1410 120 - 1
GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAC
((((........((((((((((..(((((((..........((...))...((....))..)))))))(((.(((((..........))))))))...))))))))))........)))) ( -30.69)
>DroSim_CAF1 1406 120 - 1
GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAU
((((........((((((((((..(((((((..........((...))...((....))..)))))))(((.(((((..........))))))))...))))))))))........)))) ( -29.39)
>DroEre_CAF1 1369 119 - 1
GUUACCUGCUUAAUCACUUGGCAACGUUGACAUUUCAUUUGUCUCUGGAAAUUGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAUUUGAUAAG-AACGUGAU
(((((...((((.(((..((((..(((((((.(((((....((....))...)))))....)))))))(((.(((((..........))))))))...))))..)))))))-...))))) ( -27.30)
>DroYak_CAF1 1409 119 - 1
GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGAAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGCACUCGGCUAUCUGAUAAG-AACAUGAU
((((....((((.((((.((((..(((((((......(((......)))..((....))..))))))).....((((((((....))))).)))....)))).))))))))-....)))) ( -29.70)
>consensus
GUCACCUGCUUAAUCAGUUAGCAACGUUGACAUUUAAUUUGCCUCUGGAAAUCGAAAGAAAGUCAACGGUAAUUGCAUAAUUAUAAUUGUAGUACUCAGUUAACUGAUAAAAAACAUGAU
((((.....((.((((((((((..(((((((......(((......)))..((....))..)))))))(((.(((((..........))))))))...)))))))))).)).....)))) (-24.80 = -24.72 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006