| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,315,490 – 10,315,605 |
| Length | 115 |
| Max. P | 0.814014 |
| Location | 10,315,490 – 10,315,605 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -31.57 |
| Consensus MFE | -18.90 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10315490 115 + 22407834 ---UAACCGACUUGUCAAUCCAUGAUUUUGAUAAGUUACGGCAAGGUGCAGGAGGCCUUAUUCUCAUGUUGCCGGCGAAUAUCUUGAAUC--UGGAUCCAGAAACCAAAGAACUUAUAAC ---.....((((((((((.........)))))))))).((((((.(((.((((.......))))))).)))))).......((((...((--((....)))).....))))......... ( -32.30) >DroVir_CAF1 132045 118 + 1 GGUUACUCGAUAUUUCCAUAAACGAUUUAAACAAAAUCCGGCAGAAGGCUGGGGGUCUUAUUAUUAUGUUGCCACAAGAUGUCC--AAUCUUUGAGCAAUGAACUGAAGGAUCAAGUUUU ............................((((....((((((.....))))))((((((.(((.(.((((((((.(((((....--.))))))).)))))).).)))))))))..)))). ( -23.40) >DroSec_CAF1 1216 118 + 1 GGUUAACCGACUUGUCAAUCCACGAUUUUGAUAAGUUACGGCAAGGUGCAGGAGGCCUAAUUCUCAUGUUGCCGUCGAAUAUCUUGAAUC--UGGAUCCAGAAACCAAAGAACUUAUAAC ((((....((((((((((.........))))))))))(((((((.(((.((((.......))))))).))))))).............((--((....)))))))).............. ( -34.30) >DroSim_CAF1 2 115 + 1 ---UAACCGACUUGUCAAUCCAUGAUUUUGAUAAGUUACGGCAAGGUGCAGGAGGCCUAAUUCUCAUGUUGCCGUCAAAUAUCUUGAAUC--UGGAUCCAGAAACCAAAGAACUUAUAAC ---.....((((((((((.........))))))))))(((((((.(((.((((.......))))))).)))))))......((((...((--((....)))).....))))......... ( -32.50) >DroEre_CAF1 65 118 + 1 GAUUAACGGACUUGUCUAUCCAUGAUUUUGAUAAGUUACGGCAAGGUGCAGGAGGCCUAAUUCUCAUGUUGCCGUCGAAUAUCUUAAAUC--UGGAUCUAGAAACCAAAGAACUUAUAAC .......((.....((((((((.(((((.((((..(.(((((((.(((.((((.......))))))).))))))).)..))))..)))))--))))..))))..)).............. ( -31.90) >DroYak_CAF1 20 118 + 1 GAUUAACGGACUUGUCAAUCCAUGAUUUCGAUAAAUUACGGCAAGGUGCAGGAGGUCUAAUUCUCAUGUUGCCGUCGAAUAUAUUGAAUC--UGGAUCUAGAAGCCAAAGAACUUAUAAC .......((.(((.(..(((((.((((.(((((.((((((((((.(((.((((.......))))))).)))))))..))).)))))))))--)))))..).))))).............. ( -35.00) >consensus G_UUAACCGACUUGUCAAUCCAUGAUUUUGAUAAGUUACGGCAAGGUGCAGGAGGCCUAAUUCUCAUGUUGCCGUCGAAUAUCUUGAAUC__UGGAUCCAGAAACCAAAGAACUUAUAAC .................((((..(((((.((((....(((((((.(((.((((.......))))))).)))))))....))))..)))))...))))....................... (-18.90 = -19.82 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:46 2006