Locus 3532

Sequence ID 2L_DroMel_CAF1
Location 10,311,821 – 10,311,917
Length 96
Max. P 0.788645
window5576

overview

Window 6

Location 10,311,821 – 10,311,917
Length 96
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 88.27
Mean single sequence MFE -20.81
Consensus MFE -19.32
Energy contribution -20.99
Covariance contribution 1.67
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 0.58
SVM RNA-class probability 0.788645
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10311821 96 + 22407834
--------GUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACACAUCU----GUAUGUACAUAAAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA
--------...(((((((.(((...((((......))))......((((((((.....----...))))))))...)))..))))))).......((((.....)))) ( -17.10)
>DroSec_CAF1 3585 108 + 1
AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAAGUACAAUAUAUGAACAUAUGUAGAUAUGUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA
......(((..(((...(((((.........((....))..(((((((((.(.((((((.(....).))))))...).))))))))).....))))))))..)))... ( -18.60)
>DroSim_CAF1 3821 108 + 1
AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACAUAUGUAGAUAUAUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA
......(((..(((...(((((.......(((((((((.......((((((((((((....))))))))))))......)))))))))....))))))))..)))... ( -26.72)
>consensus
AAUAAGCAGUUUGACACAAAUCAUAACAUUGGCAUAUGUACAAUAUAUGUACAUAUGUAGAUAUAUGUACAUAGAAGAUCAUGUGUUACCGAGGUUUUCAUUCUGAAA
......(((..(((...(((((.......(((((((((.......((((((((((((....))))))))))))......)))))))))....))))))))..)))... (-19.32 = -20.99 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:45 2006