| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,298,478 – 10,298,594 |
| Length | 116 |
| Max. P | 0.556759 |
| Location | 10,298,478 – 10,298,594 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -12.50 |
| Energy contribution | -13.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10298478 116 + 22407834 --CAGCUAAAAGAAGUGCGAUACACUUGAAAAUAGACAACCAGCACAAGGAGUGAUGUAGCAGGCAGAAUUUGAAUGUCUUUUGCAAGCAGUACAGAAGACUGCUUGAGUAAUUCCAC --..(((.....(((((.....))))).......(.....))))....(((((...((((.(((((.........))))).))))(((((((.......))))))).....))))).. ( -25.00) >DroSec_CAF1 2019 109 + 1 --CACAUAAAAGAAGUGCGAAAGAAUUGGAAAUAUGCAAGCAGCGGGUGGAGUGCUGUAGCAGGCAGAACUUGAAUGU---UAACAAGCAGUACAC-CGACUGCUUGAGAGAUUC--- --..((((.....(((.(....).))).....))))(((((((..((((.(.((((.(((((..(((...)))..)))---))...)))).).)))-)..)))))))........--- ( -32.30) >DroSim_CAF1 2289 112 + 1 --CACAUAAAAGAAGUGCGAAAGAAUUGGAAAUAUGCAAGCAGCAAAUGGAGUGCUGUAGCAGGCAGAACUUGAAUGU---UAGCAAGCAGUACAG-CGACUGCUUGAGAGACUCUAC --.((((..(((.(((.(....).))).......(((..((((((.......)))))).))).......)))..))))---...((((((((....-..))))))))........... ( -25.50) >DroEre_CAF1 3476 105 + 1 UGUAGCUAAAGAACGUGCGAGACAAAUGGAAAGAUGCAGGCAGCAGAGCGAGUGUUGUAGCAGGUAGAAAUUGAAUGUCU-UAACAAGCAGUU-----------UAGA-AGACUGCAC ..............((..(((((((((.......(((..((((((.......)))))).))).......)))...)))))-).))..((((((-----------....-.)))))).. ( -23.14) >DroYak_CAF1 1318 113 + 1 --UAGCUAAAGGUAGUGAGAGACAAUUGGAAAAAUGCAAGCAGUAGAGCGAGUGCUGUAGCAGGCAGAAAUUGAAUGUCU-UAGCAAGCAGUAAAG-CGACUGCUUGA-AGAUUGCAC --.........(((((..((((((.(..(.....(((..((..((.(((....))).))))..)))....)..).)))))-)..((((((((....-..)))))))).-..))))).. ( -31.20) >consensus __CAGCUAAAAGAAGUGCGAAACAAUUGGAAAUAUGCAAGCAGCAGAGGGAGUGCUGUAGCAGGCAGAAAUUGAAUGUCU_UAGCAAGCAGUACAG_CGACUGCUUGAGAGAUUCCAC .......................................((((((.......)))))).(((..(((...)))..)))......((((((((.......))))))))........... (-12.50 = -13.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:43 2006