| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,297,523 – 10,297,633 |
| Length | 110 |
| Max. P | 0.762576 |
| Location | 10,297,523 – 10,297,633 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 87.37 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -21.47 |
| Energy contribution | -21.88 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10297523 110 + 22407834 UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCAUGGCAAGUAAAUAAGCUAAAA-CAAA---ACACAACACAGAAGAUA ..........(((.....((((((((((((.....)))))))))))).........(((.(.((.....))).)))......)))....-....---................. ( -24.80) >DroSec_CAF1 1113 110 + 1 UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCAUGGCAAGUAAAUAAGCUAAAA-CGAA---ACACAACACAGAAGAUA (((((.(...(((.....((((((((((((.....)))))))))))).........(((.(.((.....))).)))......)))....-.(..---...)......).))))) ( -24.90) >DroSim_CAF1 1350 110 + 1 UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCAUGGCAAGUAAAUAAGCUAAAA-CAAA---GCACAACACAGAAGAUA (((((.(...........((((((((((((.....)))))))))))).........(((.(.((.....))).)))......(((....-...)---))........).))))) ( -25.70) >DroEre_CAF1 2456 110 + 1 UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCAUGGCAAGUAAAUAAGCUAAAA-CAAU---ACAGACAACAAAAGAUA ..........(((.....((((((((((((.....)))))))))))).........(((.(.((.....))).)))......)))....-....---................. ( -24.80) >DroYak_CAF1 310 111 + 1 UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCGUGGCAAGUAAAUAAGCUAAAAAAAAU---ACAGAACACAAAAGCUA ..........(((.....((((((((((((.....)))))))))))).........(((((.....)).)))..........))).........---................. ( -25.70) >DroAna_CAF1 1112 106 + 1 UAUCCACAUCAGCAAAUCGGCGGUCGGCUGUGCACUUAUUUGCUGGCACAAAAACAGCCCGACCAUCUUGGCACGUAAAUAGGCUAUAA-AAAGAAAUCGAAUUACA------- ................((((.(((((((((((((......)))..........)))).))))))....((((.(.......)))))...-.......))))......------- ( -21.70) >consensus UAUCUACAUCAGCAAAUCGCCGGUCAGCGGUGCAUCUGUUGGCUGGUACAAAAAUAGCUCGACCAUCAUGGCAAGUAAAUAAGCUAAAA_CAAA___ACACAACACAGAAGAUA ..........(((.....((((((((((((.....)))))))))))).........(((.(.((.....))).)))......)))............................. (-21.47 = -21.88 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:42 2006