Locus 3526

Sequence ID 2L_DroMel_CAF1
Location 10,288,544 – 10,288,636
Length 92
Max. P 0.705858
window5568

overview

Window 8

Location 10,288,544 – 10,288,636
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 84.91
Mean single sequence MFE -24.98
Consensus MFE -21.99
Energy contribution -21.97
Covariance contribution -0.03
Combinations/Pair 1.22
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.36
SVM RNA-class probability 0.705858
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10288544 92 - 22407834
UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGAUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAAUAAGCAGUC
....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -27.00)
>DroSec_CAF1 1185 92 - 1
UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUAGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAUAUAAUAGACAAUA
....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -25.40)
>DroSim_CAF1 2895 92 - 1
UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGAUCGCCAGUGUCCUAGAUAACGAGGUA-----UAUAUAAUAGACAAUA
....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----................ ( -27.00)
>DroEre_CAF1 6264 92 - 1
UGCAGCGUCGACAUCGGGCCAAAAUGGUGGGAACCUACUAAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAAAUGGCAAAC
(((.((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).)).-----....(....))))... ( -26.30)
>DroYak_CAF1 6234 92 - 1
UGCGGCGUCGACAUCGGAGCAAAAUGGUGGGAACCUACUCAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA-----UAAACAACUUGCAAUC
((((((.(((..(((((..((...((((((..((((........))))..)))))).))..)).)))..))).)).-----.........))))... ( -25.30)
>DroPer_CAF1 16807 97 - 1
UACCACCUCAACAAUAGCUCAAAAUGGUGGAAACUUACUUAUUGAGGUAGUUGCCAGUGUCCUAGAUAACGAGGUAAUUUUUAAACACUUUUAAAUA
....(((((.....(((..((...(((..(..((((........))))..)..))).))..)))......)))))...................... ( -18.90)
>consensus
UGCAGCGUCGACAUCGGGUCAAAAUGGUGGGAACCUACUAAUUGAGGUGGUCGCCAGUGUCCUAGAUAACGAGGUA_____UAAACAAUAGGCAAUA
....((.(((..((((((.((...((((((..((((........))))..)))))).)).))).)))..))).))...................... (-21.99 = -21.97 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:37 2006