Locus 3521

Sequence ID 2L_DroMel_CAF1
Location 10,283,341 – 10,283,461
Length 120
Max. P 0.569497
window5561

overview

Window 1

Location 10,283,341 – 10,283,461
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -30.00
Consensus MFE -30.00
Energy contribution -30.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
SVM decision value 0.07
SVM RNA-class probability 0.569497
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10283341 120 + 22407834
CUUCCUCAUCCAAAAACUCCACCUCCAGCACGGACUUUCGAUUGCAGUGAGUCUUCAUCACCUGCAUGGCCCACAUGAGCAGGUCCUCGUUUCGCGGCACUUUAACGCGUUCGUGCUUUA
..........................(((((((((...(((.((((((((.......))).))))).((((..(....)..)))).)))....(((.........))))))))))))... ( -30.00)
>DroSec_CAF1 3550 120 + 1
CUUCCUCAUCCAAAAACUCCACCUCCAGCACGGACUUUCGAUUGCAGUGAGUCUUCAUCACCUGCAUGGCCCACAUGAGCAGGUCCUCGUUUCGCGGCACUUUUACGCGUUCGUGCUUUA
..........................(((((((((...(((.((((((((.......))).))))).((((..(....)..)))).)))....(((.........))))))))))))... ( -30.00)
>DroSim_CAF1 3317 120 + 1
CUUCCUCAUCCAAAAACUCCACCUCCAGCACGGACUUUCGAUUGCAGUGAGUCUUCAUCACCUGCAUGGCCCACAUGAGCAGGUCCUCGUUUCGCGGCACUUUAACGCGUUCGUGCUUUA
..........................(((((((((...(((.((((((((.......))).))))).((((..(....)..)))).)))....(((.........))))))))))))... ( -30.00)
>consensus
CUUCCUCAUCCAAAAACUCCACCUCCAGCACGGACUUUCGAUUGCAGUGAGUCUUCAUCACCUGCAUGGCCCACAUGAGCAGGUCCUCGUUUCGCGGCACUUUAACGCGUUCGUGCUUUA
..........................(((((((((...(((.((((((((.......))).))))).((((..(....)..)))).)))....(((.........))))))))))))... (-30.00 = -30.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:30 2006