Locus 3514

Sequence ID 2L_DroMel_CAF1
Location 10,262,753 – 10,262,871
Length 118
Max. P 0.925506
window5546

overview

Window 6

Location 10,262,753 – 10,262,871
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 99.58
Mean single sequence MFE -36.80
Consensus MFE -36.80
Energy contribution -36.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.76
Structure conservation index 1.00
SVM decision value 1.17
SVM RNA-class probability 0.925506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10262753 118 - 22407834
GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU
((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80)
>DroSec_CAF1 4575 118 - 1
GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU
((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80)
>DroSim_CAF1 5572 118 - 1
GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU
((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80)
>DroYak_CAF1 4067 118 - 1
GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAAAUUAAUAAAUAAUAACU
((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... ( -36.80)
>consensus
GUCAGUCGGCCGGACGCUUCAGGUCCCGCUCGCCGGUGGGAAACCAUCGAUUCUAAUGACAACACCACUCAUAGUUGCUUAAGGAUUGCCUAUGAGUAAAGAUUAAUAAAUAAUAACU
((((((.(((.((((.......)))).))).))((((((....)))))).......))))......((((((((..((.........))))))))))..................... (-36.80 = -36.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:15 2006