Locus 3513

Sequence ID 2L_DroMel_CAF1
Location 10,261,051 – 10,261,141
Length 90
Max. P 0.800479
window5545

overview

Window 5

Location 10,261,051 – 10,261,141
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -23.75
Consensus MFE -20.99
Energy contribution -21.55
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.800479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10261051 90 - 22407834
AAAUGGUUGUAUCGAUGACCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU
....(((..((((((((.((..(((((.....(((......)))....)))))..))((.....)).))))))))..))).......... ( -20.20)
>DroSec_CAF1 2885 90 - 1
AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU
...((((.(((((((((((((.(((((.....(((......)))....)))))..))))........))))))))).))))......... ( -26.20)
>DroSim_CAF1 3044 90 - 1
AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU
...((((.(((((((((((((.(((((.....(((......)))....)))))..))))........))))))))).))))......... ( -26.20)
>DroYak_CAF1 2461 90 - 1
AAAUAGUUCCAUCGAUGGCCAAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAAAGGGCCGCACGCACGUCGAUAGCAAUGCGUGUACAU
................((((..(((((.....(((......)))....)))))...))))(((((((.((.....))..))))))).... ( -22.40)
>consensus
AAAUAGUUCUAUCGAUGGCCCAUCGAUAGUUUUUGCAUACACAAUUUAAUCGAGAGGGCACCACGCACGUCGAUAGCACUGGAUGUACAU
...((((.(((((((((.((..(((((.....(((......)))....)))))..))((.....)).))))))))).))))......... (-20.99 = -21.55 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:14 2006